Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1648 ATGTTTCAGTTTCATCCTCAAGGAGCTTCTAAACAAACATGTACTCTGCTTGCTGTTACTTGTGCTGCAAGTTCTGTTGAGCATAAACCTTCTCATGAACAGCTCAAATTCCCTTTCCCTGAGTTGGTTTCTGCAGGGCGTCTTGAGGTTCAAACTCTATGCGATCCGGAGAAGGAGCAGTTTTGTAAAGTTCTCGAGACGTATCAACCTAATATTGTTTACTTACAAGGGAAGCAGCTAGGAAATGGGACAGTAGGTTCACTGGTTTGGCAAGGGGTGGAATTATCCACCCCCGAAGATATAGAAGAGCTTTTCGGTCCCACATTGCCCACGGCTGTTTATTTAGAAATTCCAGATGGAGAAAGTTTTGCAGAGGCTCTTCATCTTAAGGGAATCCCATATGTTATATTTTGGAAAAGTGTTTTTTCTTGTTACGCCGCCTGCCATTTTCGTCAAGCATTTCTTTCAGTGGTGCAGAGTTCATCTACACATACATGGGATGCTTTCCACCTTGCACGAGCCTCTTTTGAACTTCACTGTGTTCAAAATAATCAAGTACTTCCTACTGACAGCAATGATGATAGTAGAGAGGTGGGACCACACCTTCTTGGCAACTGTCTCAAAATCAATGTTGACCCTCCGGAGATGGTTGAAGAAGATGATGAAGAAAGTTCCTCAGGCAGTCTTCCTGCTATAAAGATACATGATGGTGAAGTGAACTTGAGATTTCTTGTCTGCGGTGCACCTTCCACTGTTGATGAGTCATTGCTGAAATCTTTGGAGGATGGACTCAAAGCTCTTTTGACCATTGAAATGCGTGGTTGCAAGCTCCATGGCAAATTTAGTGCCCCACCACCACCTCTTCAGGCAGCTGCTTTTTCTCGCGGAGTTGTGACCATGCGTTGCGATTTATCAACCTGCAGTTCTGCACACATCTCACTTCTGATATCTGGCAGTGCCCATACTTGTTTTAATGATCAGCTTTTGGAGAGTCATATAAAAAACGAGATAATTGAGAAGAGTCAACTAGTACGTGCACAACTCAACGACGAGGGAAACAAACAGAATATCTCTGAACCTCGCAAATCTGCATCGATTGCTTGTGGAGCAACTGTATTTGAAGTTAGCATGAAGCTTCCCCAATGGGCTTTGCAGATTTTGAGACAGCTAGCACCTGATGTTTCATATCGAAGTTTCGTTGCACTTGGCATCGCCAGTATTCAAGGGTTGCCAATCGCTTCTTTTGAGAAAGAAGATGCTGAGCGCTTACTTTTCTTCTATGAAAGCTGTGAGAAAGATAGCTGTGTAAACAAAAACGATGTTGTTTTCAGCAGTCCACCAGTTTGGTTGAAACCACCCCCTCCTACGAGAAAGAGGTGTGCACCAAGCCAGGGGGCTAGTCCTGGCCTTCATGATGGCGCCTTTGCTGGGCAGGGTGCTTTTCAAAAAGTAGATGAAGAGGAAAAAGGTAAAAAAATGGTTAATGGGATGAGCACACCCTTAAATCCAGCTAGGCAGAGATTAAAAGTATCTGCAATGCGGCCAATTCCTCATGTTGGTCGCCAAAGAATGACACCTTTCTGTCGACCTATTGAGACAAATGGTTTTGATGGTGCCCAAGTTGAGCCTATTTTGCCACTTGTTGCCCATACAAAGCGTAGTGTTGGATCAACATCTGCAACACATAAAAAATCATTTTCTAGCTCAGCTCAGTCTAAGCAAGTTATTTCATTGAACCCATTACCTTTGAAGAAACATGGCTGTGACAGAGGCCCAGTACAGACCTGCCCTGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTCTGATTCTCCGGGGACACAGTCGACTTATTCCTCAAGGAGGGCTTACTGAGTTCCCTGAGGCCATACTCAATGGAAAACGCCTTGATCTCTACAACTTGTATAAAGAGGTGGTTACCAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGACAAATCTTTTCAAAGATGCGCAATTACACAACAACCAATAGAATGACCGGAGTTGGAAATACACTCAAAAGACATTATGAAACCTACCTTCTAGAATACGAATTAGCACATGATGATGTTGATGGAGAATGCTGCTTGTTGTGTCACAGTAGTGCAGCCGGGGATTGGGTGAATTGTGGCATATGTGGTGAGTGGGCTCACTTTGGCTGTGACAGAAGGCAGGGCCTAGGTGCATTTAAGGATTATGCAAAAACAGATGGGCTAGAATATATATGTCCTCATTGTAGCATTACAAATTTCAAGAAAAAACAAAGTGTTACTAATGGGTATTCTCATGGGTCAATGTCATCACGACCCCTTTGA 2346 0.4365 MFQFHPQGASKQTCTLLAVTCAASSVEHKPSHEQLKFPFPELVSAGRLEVQTLCDPEKEQFCKVLETYQPNIVYLQGKQLGNGTVGSLVWQGVELSTPEDIEELFGPTLPTAVYLEIPDGESFAEALHLKGIPYVIFWKSVFSCYAACHFRQAFLSVVQSSSTHTWDAFHLARASFELHCVQNNQVLPTDSNDDSREVGPHLLGNCLKINVDPPEMVEEDDEESSSGSLPAIKIHDGEVNLRFLVCGAPSTVDESLLKSLEDGLKALLTIEMRGCKLHGKFSAPPPPLQAAAFSRGVVTMRCDLSTCSSAHISLLISGSAHTCFNDQLLESHIKNEIIEKSQLVRAQLNDEGNKQNISEPRKSASIACGATVFEVSMKLPQWALQILRQLAPDVSYRSFVALGIASIQGLPIASFEKEDAERLLFFYESCEKDSCVNKNDVVFSSPPVWLKPPPPTRKRCAPSQGASPGLHDGAFAGQGAFQKVDEEEKGKKMVNGMSTPLNPARQRLKVSAMRPIPHVGRQRMTPFCRPIETNGFDGAQVEPILPLVAHTKRSVGSTSATHKKSFSSSAQSKQVISLNPLPLKKHGCDRGPVQTCPEEEFLKDVMEFLILRGHSRLIPQGGLTEFPEAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSITNFKKKQSVTNGYSHGSMSSRPL* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1648 781 ProSiteProfiles ARID domain profile. 595 699 IPR001606 GO:0003677
Lja3g1648 781 CDD ARID 597 695 - -
Lja3g1648 781 SMART ARID_2 592 695 - -
Lja3g1648 781 Gene3D - 593 698 IPR036431 GO:0003677
Lja3g1648 781 SUPERFAMILY ARID-like 595 710 IPR036431 GO:0003677
Lja3g1648 781 SUPERFAMILY FYVE/PHD zinc finger 698 765 IPR011011 -
Lja3g1648 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 771 - -
Lja3g1648 781 Pfam ARID/BRIGHT DNA binding domain 598 695 IPR001606 GO:0003677
Lja3g1648 781 MobiDBLite consensus disorder prediction 453 472 - -
Lja3g1648 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 699 761 IPR013083 -
Lja3g1648 781 CDD PHD_ARID4_like 705 756 - -
Lja3g1648 781 SMART bright_3 596 700 IPR001606 GO:0003677
Lja3g1648 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 771 IPR042293 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1648 Lja-Chr3 18199124 18207774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1648 4 770 ARID Transcription Factor Family AT3G43240 58.527 0.0 896
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lja3g1648 ARID 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1648 - - gmx:100816540 1368.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1648 3 18199124 18207774 Lja3g1648 3 18199124 18207774 ECH