Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1646 ATGTCACGAACCCTTAAGGGGAAACAGAAAGAGACTGGTGAATCATCCCAAATATCCCAAATGTACTGTACTATTTGCATGGATGCTAAACCTACTGAAGAAATGTTCAGGAACCTAAATTGTTCACACTATTTCTGTGATGAATGTATTGGAGGCCATGTAGCTGCAAAAATTCAGGAGAATATATCACTGGTGAAATGCCCTGACCCTGAATGCAGGGGTGTTTTGGAGCCTCATCAGTGTCGTTCAATCATTCCAGAGGAAGTGTTTGATAGATGGGAAAATGCCCTTTGCGAGAATTTGGTGCTTGTATCACAGAAATTTTACTGCCCCTTTAAGGATTGTTCAGCTATGCTGGTAAATGATGATGAAGGGGAAGTTGTGACTAGTTCTGAATGTCCACATTGTAATAGATTGTTCTGTGCACAGTGTAAGGTTCCATGGCACGGAGGAATCGATTGCAACGGGTTTGGGAACTTGAAAGAAGCCCTTTATGATGCTGATGAACTATTTCCAATCTCTGATGAGAAATATGCACTAGAGCTACAGCTACAAGAAGCTCTGTTTTCCTCTGCTTTATCAAGTAACAATAGAGTTATAAACCAAGTTATCGGTGAATATTCCCAATCCCAAACCTACTGTGCAATTTGTGTTGATGCAAAACCTGCTGAATCAATGTTCAGGAACCAAAATTGTTCCCACTTATTCTGTGACAATTGTGTAAGAACCTATGTTGCTGTGAAGATTCAGGAGAATATTTCACTTGTGAAATGCCCTGAACCCAAATGCAGGGGTGTTCTGGAGCCTCATCAGTGTCGTTCGATCATTCCTGAGGACGTGTTTGATCGGTGGGAGAATGCTCTTTGTGAGAATTTGGTGCTTGGATCGCAGAAGTTTTACTGTCCCTTTAAGGATTGTTCAGCTATGATGGTGAATGATGATGAAGAGAAAGTTGTGACTATTTCTGAATGTCCACATTGCAACAGATTGTTCTGTGCACAGTGCAAAGTTTCATGGCATGCTGGGATTGATTGTAAGGAGTTTAGAAGCTTGAAAGAGGGTGAACGAGAGAGGGAAGATCTCATGTTAATGGAACTTGCCAAGAATAAACAATGGAAAAGATGTCCAAAATGTCAATTCTATGTGGAAAAAACTGAGGGATGTCAACACATTTCATGCAGGTGTGGTTTTGAATTTTGCTATGGATGTGGATCCACTTGGACTTCGTTGCATTCTTGTAGATCTCAGTGA 1251 0.4093 MSRTLKGKQKETGESSQISQMYCTICMDAKPTEEMFRNLNCSHYFCDECIGGHVAAKIQENISLVKCPDPECRGVLEPHQCRSIIPEEVFDRWENALCENLVLVSQKFYCPFKDCSAMLVNDDEGEVVTSSECPHCNRLFCAQCKVPWHGGIDCNGFGNLKEALYDADELFPISDEKYALELQLQEALFSSALSSNNRVINQVIGEYSQSQTYCAICVDAKPAESMFRNQNCSHLFCDNCVRTYVAVKIQENISLVKCPEPKCRGVLEPHQCRSIIPEDVFDRWENALCENLVLGSQKFYCPFKDCSAMMVNDDEEKVVTISECPHCNRLFCAQCKVSWHAGIDCKEFRSLKEGEREREDLMLMELAKNKQWKRCPKCQFYVEKTEGCQHISCRCGFEFCYGCGSTWTSLHSCRSQ* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1646 416 ProSitePatterns Zinc finger RING-type signature. 232 241 IPR017907 -
Lja3g1646 416 Pfam IBR domain, a half RING-finger domain 92 154 IPR002867 -
Lja3g1646 416 Pfam IBR domain, a half RING-finger domain 283 345 IPR002867 -
Lja3g1646 416 Pfam IBR domain, a half RING-finger domain 365 413 IPR002867 -
Lja3g1646 416 SUPERFAMILY RING/U-box 209 291 - -
Lja3g1646 416 Gene3D - 347 416 - -
Lja3g1646 416 ProSiteProfiles Zinc finger RING-type profile. 23 68 IPR001841 -
Lja3g1646 416 ProSiteProfiles Zinc finger RING-type profile. 214 262 IPR001841 -
Lja3g1646 416 SUPERFAMILY RING/U-box 99 156 - -
Lja3g1646 416 SUPERFAMILY RING/U-box 20 100 - -
Lja3g1646 416 SUPERFAMILY RING/U-box 356 413 - -
Lja3g1646 416 Gene3D - 299 346 - -
Lja3g1646 416 ProSitePatterns Zinc finger RING-type signature. 41 50 IPR017907 -
Lja3g1646 416 ProSiteProfiles TRIAD supradomain profile. 210 416 IPR044066 -
Lja3g1646 416 SUPERFAMILY RING/U-box 290 349 - -
Lja3g1646 416 ProSiteProfiles TRIAD supradomain profile. 19 176 IPR044066 -
Lja3g1646 416 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 160 414 IPR031127 GO:0004842|GO:0016567
Lja3g1646 416 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 161 IPR031127 GO:0004842|GO:0016567
Lja3g1646 416 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 160 414 - -
Lja3g1646 416 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 161 - -
Lja3g1646 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 102 IPR013083 -
Lja3g1646 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 293 IPR013083 -
Lja3g1646 416 SMART ibrneu5 355 413 IPR002867 -
Lja3g1646 416 SMART ibrneu5 282 345 IPR002867 -
Lja3g1646 416 SMART ibrneu5 91 154 IPR002867 -
Lja3g1646 416 SMART ring_2 23 72 IPR001841 -
Lja3g1646 416 SMART ring_2 214 263 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1646 Lja-Chr3 18169925 18175414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1646 214 405 C3H Transcription Factor Family AT2G19610 28.856 5.02e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1646 K11975 - egr:104437955 412.535