Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1644 ATGTGTGGAGGAGCAATCATCTCCGACTTCATCCCGGCGGCGGCGGCGGGTTCCCGCCGTGTCACCGCCGACATCCTCTGGCCGAATTTGAAGAAACCCAATTCTAGGTCGATGTTGCTCGACGATGACTTCGAGGCTGGGTTTAGGGAGTTCAAGGATGACTCTGATTTCGAAGAGGAGGAGGAAGATGATGATGTTGCTCAGGATTTGCTTGCTGGTGCTAAGGGATTTGCGTTTTCTGCTACTGCTGCCGCTAAGACCAAGCGTTCCAATTCCTTCTCTAAGGGATCAACTGCTGCAAAATCTGTGGAATCAAATGAGCAAGCTGAGAAGTATGCTAGCAAAAAGAGGAAGAATCAGTATAGGGGGATCCGCCAGCGTCCATGGGGAAAATGGGCAGCTGAGATCCGTGACCCTAGAAAGGGGGTTCGTGTTTGGCTTGGAACTTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCTAGGAGGATACGCGGCAATAAAGCCAAGGTGAATTTCCCTGTTGAGCCTCAATTGTCTTCAAAACGTCTCAAGGCAAATCCAGAGAAGCAGCTGTTGAAGGGAAATCCCAACTCTGTTCAGCCCAAAGCGAACAAGATGTTCGATTTCAATGACAATCTGGAGAGCTACTTCTCTTCTATGGATCAGGTTGAACAGAAACCACTGGTTAACCAGTATGCTAACATGAGCCCCTTCCCCGGAAATGGAGCTCAGCTATCACCCTTCACTGCATCTGCTGATGTCAATGCTTATTTCAGCTCTGAGCACTCGAGCAATTCGTTTGATTACTCTGATCTTGGCTGGGGCGAACAGGGTCCCAAGACTCCTGAAATCTCATCCATGCTTTCTGCTCCTCTGGAAGGTGAATCCCAATTTGTGCAGAATAACCTGCAGTCTGACTCTCAGGAGATGCTTCCAATGCAAGATGATTCTGCAAAGACACTAACTGAGGAGCTCGCAGATATCGAATCCCAGCTGAGATTCTTTGAGAATCTTGATGGCACATGGGATGATGCTTCATTTGACTCCTTGCTGAGTGGAGATGCAAGTCAGGATGGTGGAAACCCAATGAACCTTTGGAGCTTTGATGACCTGCCTGCTGTCTCAGGCGGCGGTTTCTGA 1152 0.4896 MCGGAIISDFIPAAAAGSRRVTADILWPNLKKPNSRSMLLDDDFEAGFREFKDDSDFEEEEEDDDVAQDLLAGAKGFAFSATAAAKTKRSNSFSKGSTAAKSVESNEQAEKYASKKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGNKAKVNFPVEPQLSSKRLKANPEKQLLKGNPNSVQPKANKMFDFNDNLESYFSSMDQVEQKPLVNQYANMSPFPGNGAQLSPFTASADVNAYFSSEHSSNSFDYSDLGWGEQGPKTPEISSMLSAPLEGESQFVQNNLQSDSQEMLPMQDDSAKTLTEELADIESQLRFFENLDGTWDDASFDSLLSGDASQDGGNPMNLWSFDDLPAVSGGGF* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1644 383 CDD AP2 120 178 IPR001471 GO:0003700|GO:0006355
Lja3g1644 383 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Lja3g1644 383 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Lja3g1644 383 MobiDBLite consensus disorder prediction 90 107 - -
Lja3g1644 383 ProSiteProfiles AP2/ERF domain profile. 120 177 IPR001471 GO:0003700|GO:0006355
Lja3g1644 383 PANTHER EREBP TRANSCRIPTION FACTOR 1 377 - -
Lja3g1644 383 PANTHER DNA-BINDING DOMAIN 1 377 IPR044808 GO:0003700|GO:0009873
Lja3g1644 383 SUPERFAMILY DNA-binding domain 120 178 IPR016177 GO:0003677
Lja3g1644 383 MobiDBLite consensus disorder prediction 90 120 - -
Lja3g1644 383 Pfam AP2 domain 120 169 IPR001471 GO:0003700|GO:0006355
Lja3g1644 383 SMART rav1_2 120 183 IPR001471 GO:0003700|GO:0006355
Lja3g1644 383 Gene3D AP2/ERF domain 119 179 IPR036955 GO:0003700|GO:0006355
Lja3g1644 383 Coils Coil 322 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1644 Lja-Chr3 18138057 18141330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1644 1 383 AP2-EREBP Transcription Factor Family AT3G14230 43.689 1.24e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja3g1644 AP2 8.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1644 K09286 - gmx:100818646 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1644 3 18138057 18141330 Lja3g1644 3 18138057 18141330 ECH