Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1639 ATGGCGACCACCACCAACGCCGCCCCAGCGCCGCCGCGCCAGCTCTCACAGAAGGAATCCGACATCCAGTTGATGTTGGCAGCCGACGTCCATCTCGGCACCAAGAACTGCGATTTCCAGATGGAGCGCTACATCTTCAAGCGCCGCAACGGTATTTACATTATAAATCTTGGGAAGACATGGGAGAAGCTTCATCTCGCTGCTAGGGTCATCGTTGCCATTGAGAATCCCCAGGACATCATTGTTCAGTCTGCTAGGCCTTATGGGCAGAGAGCAGTTCTCAAATTCGCTCAGTACACTGGTGCTCACGCCATTGCTGGAAGGCATACCCCCGGTACCTTCACCAATCAGCTTCAGACTTCCTTCAGCGAGCCTCGCCTTCTCATTCTCACCGATCCAAGAACAGATCACCAGCCCATTAAGGAAGCTGCTCTTGGAAACATTCCAACAATTGCTTTCTGTGATACTGATTCCCCAATGGGACATGTTGACATTGGAATTCCTGCTAACAACAAGGGGAAACACAGCATAGGTTGTCTCTTTTGGCTTTTGGCTAGGATGGTGTTGCAGATGCGTGGTACTATTCGCCCTGGTCTTAAGTGGGATGTCATGGTGGATTTGTTCTTCTATAGAGAACCTGAGGAGGCCAAGACGCAAGAGGAGGATGAAGCTCCTGTACCCGACTATGCCCTTCCAGAGTACAATGCCGGTGCTATTGCTGCTGATGGCCAGTGGCCAGCCGCAATTGATCAACCGTGGGCCGAAAGCGCTGCACCTATTGCCGCAGCTCCTGGTTGGGCAGCAGCTCCCGAAGCTGTTGCAGGAGCCGGAGACTGGGGTGAAGCTGTTGCTCCTCCACCACCACAACAAATTCCTACTCCAGTTGATGTGCCAGCAACCGGCTGGGATTAA 912 0.5296 MATTTNAAPAPPRQLSQKESDIQLMLAADVHLGTKNCDFQMERYIFKRRNGIYIINLGKTWEKLHLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMGHVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKTQEEDEAPVPDYALPEYNAGAIAADGQWPAAIDQPWAESAAPIAAAPGWAAAPEAVAGAGDWGEAVAPPPPQQIPTPVDVPATGWD* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1639 303 Gene3D - 21 225 - -
Lja3g1639 303 MobiDBLite consensus disorder prediction 278 303 - -
Lja3g1639 303 PANTHER 40S RIBOSOMAL PROTEIN SA 14 303 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lja3g1639 303 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja3g1639 303 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja3g1639 303 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja3g1639 303 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja3g1639 303 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja3g1639 303 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja3g1639 303 Pfam Ribosomal protein S2 25 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja3g1639 303 Pfam Ribosomal protein S2 123 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja3g1639 303 SUPERFAMILY Ribosomal protein S2 17 206 IPR023591 -
Lja3g1639 303 Hamap 40S ribosomal protein SA [rps-0]. 9 248 IPR027498 GO:0003735|GO:0006412|GO:0015935
Lja3g1639 303 PANTHER 40S RIBOSOMAL PROTEIN SA 14 303 - -
Lja3g1639 303 TIGRFAM uS2_euk_arch: ribosomal protein uS2 18 212 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lja3g1639 303 CDD RPS2 25 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lja3g1639 303 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1639 Lja-Chr3 18081077 18083189 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1639 6 275 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.007 1.05e-146 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1639 K02998 - gmx:100805318 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1639 3 18081077 18083189 Lja3g1639 3 18081077 18083189 ECH