Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1626 ATGGCTAATGGAGGAGACAAAAGCAATGATTTCTATGCTGTTCTGGGCTTGAATAAGGAGTGCACTGAATCAGAGTTGAGGAATGCATATAAGAAACTTGCACTGAAATGGCACCCAGATCGTTGTTCAGCTTCAGGGAATTTGAAGTTTGTGGAAGAAGCTAAGAAGAAATTCCAGTCAATTCAAGAAGCTTATTCTGTTTTATCTGATGCGAACAAAAGATTAATGTACGACATAGGAGTTTATGATAGTGATGATGACGAAAATGGTATGGGAGACTTCTTGAACGAAATGGTAACAATGATGAGTCAGACTGAACCAAATCAGGAAAATGGGGAGGAGAGCTTTGAGGAGTTGCAAAAGCTGTTTGAAGATATGTTCCAAGCGGATATTGGATTAGGTGGAAGCTCCTCTTTTGCTGCTGCCGGTTGCTCTACTTTATCCACTTACATGACTTACAGCGAAAGTTCGAATTCAAATAAACGCAATTCCACCGAGTTTAATTTTGGGAAGGCGGAGGATTCTTCTGACTTCGATGCTCATTACCCGAACTTCTGCTTTGGGGTGAAGCAGCACCTCCAAGATATCAAGAAGGAAAACGTGGGAATTCCAGAAGGAGGAGGTAGCAGCAGACATAGAAATGGTAGAAAACAAAAAATCTCTCGCGGCCATGATGTTTCCTCTAATGACTACCCCGGAATTTCGGCTAATTAA 714 0.416 MANGGDKSNDFYAVLGLNKECTESELRNAYKKLALKWHPDRCSASGNLKFVEEAKKKFQSIQEAYSVLSDANKRLMYDIGVYDSDDDENGMGDFLNEMVTMMSQTEPNQENGEESFEELQKLFEDMFQADIGLGGSSSFAAAGCSTLSTYMTYSESSNSNKRNSTEFNFGKAEDSSDFDAHYPNFCFGVKQHLQDIKKENVGIPEGGGSSRHRNGRKQKISRGHDVSSNDYPGISAN* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1626 237 SUPERFAMILY Chaperone J-domain 8 93 IPR036869 -
Lja3g1626 237 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Lja3g1626 237 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Lja3g1626 237 CDD DnaJ 10 70 IPR001623 -
Lja3g1626 237 Pfam DnaJ domain 10 78 IPR001623 -
Lja3g1626 237 Gene3D DnaJ domain 7 137 IPR036869 -
Lja3g1626 237 PRINTS DnaJ domain signature 73 92 IPR001623 -
Lja3g1626 237 PRINTS DnaJ domain signature 30 45 IPR001623 -
Lja3g1626 237 PRINTS DnaJ domain signature 53 73 IPR001623 -
Lja3g1626 237 PRINTS DnaJ domain signature 12 30 IPR001623 -
Lja3g1626 237 MobiDBLite consensus disorder prediction 200 237 - -
Lja3g1626 237 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 231 - -
Lja3g1626 237 PANTHER PUTATIVE, EXPRESSED-RELATED 1 231 - -
Lja3g1626 237 SMART dnaj_3 9 73 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1626 Lja-Chr3 17970209 17974559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1626 12 78 C2H2 Transcription Factor Family AT1G74250 43.284 4.40e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1626 - - lja:Lj3g3v2576120.1 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1626 3 17970209 17974559 Lja3g1626 3 17970209 17974559 ECH