Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1624 ATGGAGGTTATCAACGACGACGACGAGATCGAGTTCCGCCGATCACCGGCGAGCGGATCTCCGCCGTCGTCTAACGGTCGGATCACGGTGACGGTTGCGGCGCCGGCTCCTCAGGCGCATCCGCATCCGGCGCCGAACACCTTGGCATTAGCGCTTCCGGTTCAGCAGCCGGTGAAGGGGAGCAACGGCGGTGGAGGGAGTGCAGGCGGAGGAGGAGGAGGAGGGAGGGAGGATTGCTGGAGCGAAGGCGCGACGGCGGTGCTGATCGAGGCTTGGGGTGAGAGGTATTTGGAGCTCAGCCGGGGGAATCTGAAGCAGAAGCACTGGAAGGAGGTGGCGGAGATCGTGAGCGGGAGAGAGGATTACTTGAAGACGCCGAAGACTGATATTCAGTGCAAGAACCGGATCGATACGGTGAAGAAGAAGTACAAATCGGAGAAGGCGAAGATCTCCGCCGCAGGCGGCGGAACAACCAGCAAATGGCCGTTTTATGATCGATTGGACCAGCTGATTGGCCCAACCGCCAAGATCCCCGCCGGGAACAGTAATTCGCAGCAGCAGAAATTGCCGTTAGGGATCCCGGTCGGAGTTCGCAGCGGTGGTGGTGCTTCGAGTCAGTATAATTCTCAAAAGCAGCATCAGCAGCAGCAGGAGCAGGAGGAGGATGTTGAGTTGAAGAACCAGAAGATGCAGTACCGGCGTCGTCCTCCTCCGGTGGATTCCGATTCGTCGGAGAGGGAAGTGGTGTCGCCGGTTTCAAGCGACAGTTATCCGCCGGGAAGGTACGAGAGGAAGAGGGCGAGGGTGATGAATTCAAGGGGAGGAAGGAAGGGGAAGGGTTGGGGGAGTGCGGTGAGGGAATTGACTCAGGCGATTCTCAAGTTTGGGGATGCTTATGAGCAGGCGGAGACGTCGAAGCTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTTGCCAAGGACTTGGAGTTGCAGAGAATGCAGTTTTTCATGAAGACTCAGATGGAGATTTCGCAGCTCAAGCTTGCGAGGAAAGAAGGCGGCAACCCGAGCAACCACCACAGCAACAACAATGACAGCAACAACCATAGCAACAATAGTGACACTGAGTGA 1119 0.5719 MEVINDDDEIEFRRSPASGSPPSSNGRITVTVAAPAPQAHPHPAPNTLALALPVQQPVKGSNGGGGSAGGGGGGGREDCWSEGATAVLIEAWGERYLELSRGNLKQKHWKEVAEIVSGREDYLKTPKTDIQCKNRIDTVKKKYKSEKAKISAAGGGTTSKWPFYDRLDQLIGPTAKIPAGNSNSQQQKLPLGIPVGVRSGGGASSQYNSQKQHQQQQEQEEDVELKNQKMQYRRRPPPVDSDSSEREVVSPVSSDSYPPGRYERKRARVMNSRGGRKGKGWGSAVRELTQAILKFGDAYEQAETSKLQQVVEMEKQRMKFAKDLELQRMQFFMKTQMEISQLKLARKEGGNPSNHHSNNNDSNNHSNNSDTE* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1624 372 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 25 343 IPR044823 -
Lja3g1624 372 MobiDBLite consensus disorder prediction 342 372 - -
Lja3g1624 372 Gene3D - 80 145 - -
Lja3g1624 372 MobiDBLite consensus disorder prediction 351 372 - -
Lja3g1624 372 MobiDBLite consensus disorder prediction 173 282 - -
Lja3g1624 372 MobiDBLite consensus disorder prediction 215 242 - -
Lja3g1624 372 Pfam Myb/SANT-like DNA-binding domain 77 170 IPR044822 -
Lja3g1624 372 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 25 343 - -
Lja3g1624 372 MobiDBLite consensus disorder prediction 176 190 - -
Lja3g1624 372 MobiDBLite consensus disorder prediction 54 77 - -
Lja3g1624 372 Coils Coil 215 235 - -
Lja3g1624 372 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1624 Lja-Chr3 17957894 17959644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1624 26 356 Trihelix Transcription Factor Family AT3G14180 46.829 2.64e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja3g1624 Myb_DNA-bind_4 9.2e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1624 - - gmx:100782874 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1624 3 17957894 17959644 Lja3g1624 3 17957894 17959644 ECH