Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1622 ATGGCCCATTTCATCCATCATGTATTTACATTCATATGCGGGTATGCAGTTGGGTTTAGAAGATCATGGAGAGTCTCTCTGGTGGTATTCTCAGTCACCCCATTGACAATGTTCTTAGGCATAGCTTACAAAGCAATTTATGGTGGTCTAGCAGCAAAAGAGGAAGCTTCTTATAAGAAAGCTGGCAGCATTGCTGAGCAGGCCATCAGTTCAATCAGGACAGTGTTTTCTTTTGTTGCAGAAAGCCAATTGGGTGAAAAATATGCTGACCTACTGCAAAAATCAGCTCCAATTGGAGCAAGAATTGGATTTGCTAAGGGTGCAGGCATGGGTGTTATCTATTTAGTTACCTATTCAACATGGGCCTTGGCTTTCTGGTATGGCTCCATTTTAATTGCCAAGGGTCAACTTGATGGAGGTTCTGCTATTGCTTGTTTCTTTGGTGTCAATGTAGGAGGAAGAGGCTTGGCACTGGCACTTTCATATTTTGCACAATTTGCACAAGGAACTGTTGCAGCAAGCCGTGTGTTCTTTATCATAGAAAGAGTCCCTGAGATTGATCCCTATAGTCCTGAGGGTAGGAAGGTTTCCTCTGCTCGTGGAAGGATTGAGTTGAAAAATGTTAGTTTCGCATACCCATCTCGTCCTGATTCTCTGATACTTAATTCCCTTAACTTGGTGTTTCCATCTTCAAAAACTCTTGCATTGGTTGGTGCAAGTGGAGGGGGCAAGTCCACTATCTTTGCTCTTATAGAGAGGTTTTATGACCCTATTGAAGGAATTATTACTTTGGATGGTCATGATTTGAGGACATTGCACGTAAAGTGGCTAAGAGATCAGATTGGGATGGTTGGTCAGGAGCCAGTTCTCTTTGCCACATCTATACTGGAAAATGTGATGATGGGGAAAGATAATGCCACCAAGGAAGAGGCAATTGCTGCTTGCAAAGCTGCTGATGCTCACAACTTCATCTATAACTTACCACTAGGCTATGACACTCAGGTTGGAGATAGGGGTACAAAGCTTTCAGGAGGTCAGAAGCAGCGAATTGCGTTGGCTCGAGCGATGATCAAAGATCCTAAAATCCTTCTTTTAGATGAACCTACAAGTGCTCTTGATGCTGAGTCTGAATCTGCAGTCCAAAGGGCCATTGACAAGATTTCTGCAGGCAGAACAACCATTGTCATTGCTCACAGGATAGCAACAGTGAAGAATGCTCATGCCATTGTAGTCCTTGAACATGGTTCTGCCACTGAGATCGGTGACCACCGCCAGCTTATGGCGAAAGCGGGAACCTACTACAACCTTGTCAAGCTTGCTACTGAATCCATTTCACAACCTCTCTTTAAAGAAAATGGCATGCAGAAAGCCAATGATTTATCCATCTATGATAAATCTGCTCCTGATGTATCAAGATCAGAATATTTAGTTGATATCTCGCGGCCTAAGATCTTCAAACCCATGGAGGAGGATGAACAAGACGAGATGGAAGATAAGAAAGATAAAAGGGCAAGACAATACAGACTTTCTGAGGTATGGAAATTGCAAAAACCAGAATCTGTGATGCTACTTTCAGGGTTTCTTCTGGGAATGTTTGCAGGTGCTATTCTGTCCCTTTTCCCATTGATTTTAGGCATATCCCTGGGGGTGTATTTTGGCGATGACCTTTCAAAGATGAAAAGAGATGTTGGATACCTTTGTTTGGTACTTGTTGGCCTTGGATTTGGTTGCATACTTTCCATGACAGGACAACAAGGCTTGTGTGGTTGGGCTGGCTCAAAGCTAACACTGAGGGTTAGAAACCTCTTGTTTCAATCCATACTGAAACAAGAACCTGGATGGTTTGATTTTGAAGAAAACTCCACTGGAGTGTTGGTGTCAAGGCTCTCAATAGACGCTGTTAGTTTTCGGTCGGTACTCGGTGACCGAATCTCAGTCCTTCTTATGGGGTTGAGTTCAGCTGCTGTAGGCCTTGGCGTGTCCTTTGCCTTCAATTGGAGACTAACCCTTGTTGCAGCTGCTGTAACTCCTTTAGCCCTTGGTGCAAGCTATGTAAACTTGATCATAAACATCGGGCCGCGAGTTGACAACACCTCTTATGCCAGAGCTAGCAACATTGCTTCTGGTGCAGTGTCAAACATAAGAACAGTTGCAACATTTTCAGCCCAGGAACAGATAGTCATGTCCTTTGATAGAGCATTATCAGAACCTATGAAAAAATCATTAAAAAGTTCACAACTTCAAGGTCTTGTGTTTGGATTCTTTCAAGGTGCCATGTATGGAGCATACACCTTAACTCTTTGGTTTGGAGCCTACCTTGTAAAAATTGACAAAGCATCATTTAATGATGTGTATAAGATTTTTCTCATTCTTGTTCTGAGCTCATTTTCTGTGGGACAATTAGCTGGTCTAGCACCGGATACTTCTATGGCGGCTTCAGCGATTCCTTCAGTTCAAGATATCATAAACAGAAGGCCACTCATAGGGAGCGATGGAAGAACCAAAAGTAGGAAACTTGGAAGATCAAAGGAGATGAAAATAGAGTTCAAAATGGTGACATTTGCATATCCATGTAGGCCTGAGGTGACTGTGTTGAGGGATTTCTGTTTGAAGGTGAAAGGTGGAAGCACTGTGGCCTTGGTGGGACCAAGTGGATCAGGAAAATCAACAGTCATATGGATGACACAGAGGTTCTATGATCCAGATGAAGGGAGTGTGATGCTGGGTGGGGTGGATTTGAGAGAGATTGATGTGAAGTGGTTGAGGAGGCAAATAGCTTTGGTAGGTCAAGAACCTGCATTGTTTGCTGGGAGCATAAGGGATAATATAGCATTTGGGGACCCAAGTGCTTCATGGGCTGAAATTGAAGCTGCTGCAAAGGAAGCTTACATTCACAAATTCATCAGTGGTCTTCCTCAGGGCTATGAAACCCAGGTTGGTGAAAGTGGGGTTCAATTATCAGGTGGGCAGAAACAAAGAATTGCAATAGCAAGGGCCATATTGAAGAAATCAAAAGTGCTTCTGCTTGATGAAGCAAGCAGTGCCTTGGACTTGGAATCAGAGAAGCACATACAAGATGCCCTGAAGAAAGTTTCAAAGGAGGCAACAACCATAATAGTTGCACACCGTCTTTCCACAATCAGAGAGGCTGAAAGGATTGCAGTGATGAAAGATGGGGGAGTGGTTGAGTATGGTAGCCATGACACTCTCATGGCTTCCTCTCAAAATGGTTTGTATGCTAGCTTAGTTCGAGCTGAGACTGAAGCCAATGCCTTTTCTTGA 3282 0.4348 MAHFIHHVFTFICGYAVGFRRSWRVSLVVFSVTPLTMFLGIAYKAIYGGLAAKEEASYKKAGSIAEQAISSIRTVFSFVAESQLGEKYADLLQKSAPIGARIGFAKGAGMGVIYLVTYSTWALAFWYGSILIAKGQLDGGSAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFFIIERVPEIDPYSPEGRKVSSARGRIELKNVSFAYPSRPDSLILNSLNLVFPSSKTLALVGASGGGKSTIFALIERFYDPIEGIITLDGHDLRTLHVKWLRDQIGMVGQEPVLFATSILENVMMGKDNATKEEAIAACKAADAHNFIYNLPLGYDTQVGDRGTKLSGGQKQRIALARAMIKDPKILLLDEPTSALDAESESAVQRAIDKISAGRTTIVIAHRIATVKNAHAIVVLEHGSATEIGDHRQLMAKAGTYYNLVKLATESISQPLFKENGMQKANDLSIYDKSAPDVSRSEYLVDISRPKIFKPMEEDEQDEMEDKKDKRARQYRLSEVWKLQKPESVMLLSGFLLGMFAGAILSLFPLILGISLGVYFGDDLSKMKRDVGYLCLVLVGLGFGCILSMTGQQGLCGWAGSKLTLRVRNLLFQSILKQEPGWFDFEENSTGVLVSRLSIDAVSFRSVLGDRISVLLMGLSSAAVGLGVSFAFNWRLTLVAAAVTPLALGASYVNLIINIGPRVDNTSYARASNIASGAVSNIRTVATFSAQEQIVMSFDRALSEPMKKSLKSSQLQGLVFGFFQGAMYGAYTLTLWFGAYLVKIDKASFNDVYKIFLILVLSSFSVGQLAGLAPDTSMAASAIPSVQDIINRRPLIGSDGRTKSRKLGRSKEMKIEFKMVTFAYPCRPEVTVLRDFCLKVKGGSTVALVGPSGSGKSTVIWMTQRFYDPDEGSVMLGGVDLREIDVKWLRRQIALVGQEPALFAGSIRDNIAFGDPSASWAEIEAAAKEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKKSKVLLLDEASSALDLESEKHIQDALKKVSKEATTIIVAHRLSTIREAERIAVMKDGGVVEYGSHDTLMASSQNGLYASLVRAETEANAFS* 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1622 1093 ProSitePatterns ABC transporters family signature. 986 1000 IPR017871 GO:0005524
Lja3g1622 1093 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 168 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g1622 1093 CDD ABC_MTABC3_MDL1_MDL2 847 1085 - -
Lja3g1622 1093 Gene3D - 193 441 IPR027417 -
Lja3g1622 1093 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 526 810 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g1622 1093 Pfam ABC transporter 221 370 IPR003439 GO:0005524
Lja3g1622 1093 Pfam ABC transporter transmembrane region 2 150 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g1622 1093 Pfam ABC transporter transmembrane region 526 794 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g1622 1093 CDD ABC_6TM_Pgp_ABCB1_D2_like 513 828 - -
Lja3g1622 1093 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 203 439 IPR003439 GO:0005524
Lja3g1622 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 843 1084 IPR027417 -
Lja3g1622 1093 Gene3D ABC transporter type 1, transmembrane domain 2 456 IPR036640 GO:0005524|GO:0016021
Lja3g1622 1093 PANTHER ABC TRANSPORTER B FAMILY 1 1092 - -
Lja3g1622 1093 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 176 - -
Lja3g1622 1093 Gene3D ABC transporter type 1, transmembrane domain 472 689 IPR036640 GO:0005524|GO:0016021
Lja3g1622 1093 Gene3D ABC transporter type 1, transmembrane domain 697 844 IPR036640 GO:0005524|GO:0016021
Lja3g1622 1093 SUPERFAMILY ABC transporter transmembrane region 512 826 IPR036640 GO:0005524|GO:0016021
Lja3g1622 1093 SMART AAA_5 230 431 IPR003593 -
Lja3g1622 1093 SMART AAA_5 874 1060 IPR003593 -
Lja3g1622 1093 ProSitePatterns ABC transporters family signature. 342 356 IPR017871 GO:0005524
Lja3g1622 1093 Gene3D - 845 1087 IPR027417 -
Lja3g1622 1093 SUPERFAMILY ABC transporter transmembrane region 4 188 IPR036640 GO:0005524|GO:0016021
Lja3g1622 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 439 IPR027417 -
Lja3g1622 1093 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 847 1083 IPR003439 GO:0005524
Lja3g1622 1093 CDD ABC_MTABC3_MDL1_MDL2 203 440 - -
Lja3g1622 1093 PANTHER - 1 1092 - -
Lja3g1622 1093 Pfam ABC transporter 866 1013 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1622 Lja-Chr3 17932306 17937230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1622 496 1090 Calmodulin-binding Proteins AT2G36910 36.439 1.35e-103 352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1622 3 17932306 17937230 Lja3g1622 3 17932306 17937230 ECH