Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1619 ATGGCGACCCAAATGGAAGAAGAGGAGATGCACCAAATCACCAGCAACGACGATTCTGAAGGATCCTCCTACCTTGGTTCGGAATTCGACGATTCGGAAGGAGACCCCGATTTCGAAATCCTCGAAGAAACCCAAATCAGCTTCTCAAATCTCTCAGTCACAAGCAAGGCGAAAGCGCGCTCTGTTAAGGGTAAGGGCCTGGCTACCACTGAGAATGACCCACAAGTGCCATCTCCTGATGATGATGATTTTGAAATAGTTCAGAAAACAATAAATGCGGGGTTGCTGGAGAAGCTGAAAGTGGATGAGTGCAAGCTCTATTTGAGGAAGAATGGTCTGAGGCTAACTGGGAATAAGGCTACACTCATCCAGCGTATAAAGGAGCATCTAGAGATTGTGAATGGTGAAGGGGAGAAAAAGTACCCGCCTTCTAGCTTTGTATTGAATTGTAAAGGTGATGCATGCACTGGTGATGTTGTTTTGTTTGAGCAGAACGTTTATGAAATGTTTAGCATAGCATCTAGGAGTGCCACTGGTCCACCTTGTGGCAAAAGGACTGTTGCAGGCCGCATAGTGAAAGAAAGCTATGGTGCTGCCAAGCAGCAACATACATTTACGATTGAAGTGCTCTGGAGCAAAGGAGAAAAGCCTCTCCGTCCCCTTTACCCTTTGCTGATTAAGGGTCGAAATCTTTATAGGTTGAAGACATTGAGACAGAAATGGGAGGATGAAGGGAAACGGCAGCAAATATTGATGGAAAAACACTCCAGGGGATTTGTTGCCAGGGCAGATAGAGAAGTGAGGGTACAAGAAAAGGAGAAGAGGAAAAATATTAGGGAAAAAAGGATTTCCAAAAAGGACTCTGTTAGGAACCAATGTCAATCCCATTCACACATTGTTGTGCCACGATATCAAACTCAAGAAACAGACGTATCCATGAATTCAGAAAAAGCAGAATTTCCATCTCAAAATTCAGGTTTATCTGACCATGCAACTAAACAAACATCTGCTATCATAAGTAAACCGACAATGGGATCTGACCAATTGGGATATTCAGGAAAAACACCATTTACTGTCAACCATATGTATAATCAGCAAAGTTTGAAGTCCTCAGCTGATTGTATGAGCACTTTCAATAGGGGAGCTGAACGTAGTGCAAACTACAATCGCAATGACTTCCATTCCAGAGACAATCGAACTACTATTGAGAAACGGAGCACTTTCGGTAGGGGAGCTGAACTTAGTGCAAACTACAATCGCAATGACTTCCATTCCAGAGAAAATCGAACTACTATTGAGAAACGCCACCCTTCCATAGCTGAGAGAAACGGATTTACAGAGAGGACTTATCGTAGGGAGCCTTTGGCAAATGCAAATCACTTTCATCCATTGACTCCTAACAGAGAAAGCTTTAGGCAGGGACAGTTGTGTAGATATTATTCCCGTGGGAGGTGCTATTTTGGGGATAACTGCAAATACTTGCATGATCTGTGA 1494 0.4337 MATQMEEEEMHQITSNDDSEGSSYLGSEFDDSEGDPDFEILEETQISFSNLSVTSKAKARSVKGKGLATTENDPQVPSPDDDDFEIVQKTINAGLLEKLKVDECKLYLRKNGLRLTGNKATLIQRIKEHLEIVNGEGEKKYPPSSFVLNCKGDACTGDVVLFEQNVYEMFSIASRSATGPPCGKRTVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLRPLYPLLIKGRNLYRLKTLRQKWEDEGKRQQILMEKHSRGFVARADREVRVQEKEKRKNIREKRISKKDSVRNQCQSHSHIVVPRYQTQETDVSMNSEKAEFPSQNSGLSDHATKQTSAIISKPTMGSDQLGYSGKTPFTVNHMYNQQSLKSSADCMSTFNRGAERSANYNRNDFHSRDNRTTIEKRSTFGRGAELSANYNRNDFHSRENRTTIEKRHPSIAERNGFTERTYRREPLANANHFHPLTPNRESFRQGQLCRYYSRGRCYFGDNCKYLHDL* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1619 497 Pfam SAP domain 96 130 IPR003034 -
Lja3g1619 497 SMART sap_9 96 130 IPR003034 -
Lja3g1619 497 ProSiteProfiles Zinc finger C3H1-type profile. 471 497 IPR000571 GO:0046872
Lja3g1619 497 Gene3D - 464 497 - -
Lja3g1619 497 MobiDBLite consensus disorder prediction 1 38 - -
Lja3g1619 497 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE 2 496 - -
Lja3g1619 497 MobiDBLite consensus disorder prediction 62 82 - -
Lja3g1619 497 Gene3D SAP domain 88 143 IPR036361 -
Lja3g1619 497 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 2 496 IPR045124 GO:0003723|GO:0045892
Lja3g1619 497 SUPERFAMILY CCCH zinc finger 473 496 IPR036855 GO:0046872
Lja3g1619 497 SUPERFAMILY SAP domain 87 131 IPR036361 -
Lja3g1619 497 ProSiteProfiles SAP motif profile. 96 130 IPR003034 -
Lja3g1619 497 Pfam CCCH-type zinc finger 476 496 IPR041367 -
Lja3g1619 497 SMART c3hfinal6 472 497 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1619 Lja-Chr3 17918715 17922617 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja3g1619 SAP 1.6e-10 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1619 - - lja:Lj3g3v2576220.1 999.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1619 3 17918715 17922617 Lja3g1619 3 17918715 17922617 ECH