Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1616 ATGCCTTGGAGAAATGCTATGCTACCTATCCATTTCTTCAAGATTATTCTTAAAACTAATCTTGAAAGGCTTAAAATACCCAACAAATTTACAGAGATATTTGAAGGTGATTTATCAAATCCAATATTTATCAAGCCTCCGGATAGTACTAAATGGGAAGTTTATTGGATAAAACAGAATGGCGAGGTTTGGTTCGAAAAAGGTTGGAAGAAATTTGCTCAAAATTACTCTCTTGATTATGGGAACATGGTGGTGTTTAAATATGCAGGAACTTCAGAGCTTGATGTAATAATACTTGGCCAGAGTGCTCTAGAAATAGACTATACTGAAAATCTTGATCAGATCGATGATGATGAACCGGTTTCGGATCAAAATGCTAGACAAAAATCGCTATTATTATCTCCTCGACCTCATAAGAAAATGAGAAGTGAGGAGCCTACTCAAAGAACTTCATCACTGAATTTGCCCAAGGAAGCTAAAGCAAAGGAAGTAGCTGAAAAGTTCATCTCATACAGTCCTTTTTTCACAGTTTCCATAAAGAATGTTAATCTGACAAAAAATTACCTGTGTGTCCCAGATTTGGAAGGTGTTATTGAGAATAAGAAGAAGCAAGTGAGGCTGCAAAATGGAAAAAATTCATGGAATGTGAATTTGCTCTGTCGTCTAGGTCCTACTTCAACTCGTCGTTTCTGTGCTGGTTGGAACTTATTCGCAAGGGAAAATAAACTGCTACCAGGGGATGTTTGTGTCTTTGAACTGTTAAACAAAGAAGATTCAGTTTTTAAAGTTCATGTTTATAAATGA 804 0.3595 MPWRNAMLPIHFFKIILKTNLERLKIPNKFTEIFEGDLSNPIFIKPPDSTKWEVYWIKQNGEVWFEKGWKKFAQNYSLDYGNMVVFKYAGTSELDVIILGQSALEIDYTENLDQIDDDEPVSDQNARQKSLLLSPRPHKKMRSEEPTQRTSSLNLPKEAKAKEVAEKFISYSPFFTVSIKNVNLTKNYLCVPDLEGVIENKKKQVRLQNGKNSWNVNLLCRLGPTSTRRFCAGWNLFARENKLLPGDVCVFELLNKEDSVFKVHVYK* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1616 267 CDD B3_DNA 11 99 IPR003340 GO:0003677
Lja3g1616 267 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 7 266 IPR039218 -
Lja3g1616 267 Gene3D - 155 267 IPR015300 -
Lja3g1616 267 PANTHER TRANSCRIPTIONAL FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 7 266 - -
Lja3g1616 267 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Lja3g1616 267 SUPERFAMILY DNA-binding pseudobarrel domain 10 108 IPR015300 -
Lja3g1616 267 SUPERFAMILY DNA-binding pseudobarrel domain 173 267 IPR015300 -
Lja3g1616 267 CDD B3_DNA 174 267 IPR003340 GO:0003677
Lja3g1616 267 Gene3D - 8 103 IPR015300 -
Lja3g1616 267 SMART B3_2 12 102 IPR003340 GO:0003677
Lja3g1616 267 SMART B3_2 174 267 IPR003340 GO:0003677
Lja3g1616 267 ProSiteProfiles B3 DNA-binding domain profile. 174 267 IPR003340 GO:0003677
Lja3g1616 267 Pfam B3 DNA binding domain 174 265 IPR003340 GO:0003677
Lja3g1616 267 Pfam B3 DNA binding domain 19 94 IPR003340 GO:0003677
Lja3g1616 267 MobiDBLite consensus disorder prediction 115 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1616 Lja-Chr3 17865882 17867241 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1616 144 267 B3 DNA Binding Superfamily AT3G18990 29.921 7.38e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja3g1616 B3 5.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1616 - - gmx:102661781 298.901