Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1614 ATGCAGAATCACAGGTTGAAGCAGCAGCAACAGCAAGCTCTTATGCAGCAAGCGCTTCTCCAACAGCAATCTCTCTACCACCCTGGTCTCCTTGCTCCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGGAACATCCACACACAGGTAACTGAGCTGCTTTTGCAAGAAGTTTTTGCAGGTACAGGCCCTGTTGAAGGTTGTAAACTTTTCAGAAAGGAGAAGTCATCCTATGGATTCATTCATTACTTCGATCGTAGATCTGCTGCTCTTGCCATATTAACTCTCAATGGGAGGCATCTATTTGGGCAGCCCATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAAGATACATCAGGACACTACAACATATTTGTTGGTGATCTTAGTCCTGAGGTTACTGATGCTACGCTGTTTGCATGCTTTTCTGTCTACCCCAGTTGTTCTGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCGAGGGGATTTGGATTTGTTTCATTTCGTAGTCAACAGGACGCACAAAGTGCTATTAATGATTTGACTGGAAAGTGGCTTGGAAGTAGACAAATACGCTGCAATTGGGCAACAAAAGGTGCTGGTGGCAATGAAGAAAAGCAAAACTCAGACACCAAAAGTGTGGTAGAACTAACTAATGGTTCATCTGAAGATGGTAAAGAAATATCTAACAGTGATGCTCCTGAGAACAATCCTCAATATACTACTGTTTATGTGGGTAACCTTGGTTCAGAGGCAACACAGCTCGATCTCCATCGCCACTTCCATGCTCTTGGAGCTGGAGTAATAGAGGAGGTTCGTGTCCAGCGTGACAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTAGCTATTCAGATGGGGAATACTCAGTCTATTCTCTGTGGCAAACAAATTAAGTGCTCATGGGGCAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCTCTTCCCCCACCTGCTCCTGCAACTCTGCCTGGCTTCTCTGCGACTGATCTTCTGGCGTATGAGCGACAGCTAGCAATGAGCAAGATGGGTGGTGTCCATGCCTTGATGCACCCCCAAGGGCAGCACCCTCTTAAACAGGCAGCAATTGGAGCGAGCCAGGCGATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTGA 1257 0.4694 MQNHRLKQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTELLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDTKSVVELTNGSSEDGKEISNSDAPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQIKCSWGSKPTPPGTASNPLPPPAPATLPGFSATDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1614 418 SUPERFAMILY RNA-binding domain, RBD 38 132 IPR035979 GO:0003676
Lja3g1614 418 Gene3D - 1 136 IPR012677 -
Lja3g1614 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 211 IPR000504 GO:0003723
Lja3g1614 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 122 IPR000504 GO:0003723
Lja3g1614 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 328 IPR000504 GO:0003723
Lja3g1614 418 Gene3D - 137 239 IPR012677 -
Lja3g1614 418 Gene3D - 240 339 IPR012677 -
Lja3g1614 418 CDD RRM3_TIA1_like 260 335 - -
Lja3g1614 418 SUPERFAMILY RNA-binding domain, RBD 133 223 IPR035979 GO:0003676
Lja3g1614 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Lja3g1614 418 CDD RRM1_TIA1_like 56 126 - -
Lja3g1614 418 SUPERFAMILY RNA-binding domain, RBD 249 344 IPR035979 GO:0003676
Lja3g1614 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 128 IPR000504 GO:0003723
Lja3g1614 418 MobiDBLite consensus disorder prediction 217 259 - -
Lja3g1614 418 MobiDBLite consensus disorder prediction 220 259 - -
Lja3g1614 418 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 2 399 - -
Lja3g1614 418 SMART rrm1_1 140 213 IPR000504 GO:0003723
Lja3g1614 418 SMART rrm1_1 55 124 IPR000504 GO:0003723
Lja3g1614 418 SMART rrm1_1 261 331 IPR000504 GO:0003723
Lja3g1614 418 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 399 - -
Lja3g1614 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 335 IPR000504 GO:0003723
Lja3g1614 418 CDD RRM2_PUB1 140 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1614 Lja-Chr3 17856025 17861627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1614 137 328 Eukaryotic Initiation Factors Gene Family AT1G49760 29.231 1.99e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1614 K13201 - gmx:100814415 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1614 3 17856025 17861627 Lja3g1614 3 17856025 17861627 ECH