Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1613 ATGTCTTCTAAAGCTATTCACTTTAGCAAGAGGATTGATGAATGCAGCCTTCAAAAAGGGGTGTTGAGGATGCCGAGGAGGTTTGTTAGTAAACATTGGATCAATGCAAGAATTTCAAACCCAGTAGCTCTTTTGCTTCCTGGTGAAAGGTGGAAAGTTACTTGGAAAAAACATGGTTCTGATGTTATCATGTTTGGAGATCATTGGAAGGAATTTACAGAGTTTTATTCTTTGGATGTGGAACATTCTTTGTGGTTTTCTTTCAGGAACGATTCACGTGTTCGAGGAACACAATTCAAAGTTAGGATACATGAATCTGGCTTGGAAATAAAATACCCTGGTAAAAGAGGAATCAGCCAAGCCAAAGGAGGGTGGTCTGAGGAGGAGCCCCTGAAAGACTCTAGAATTAGTAGTGCAGATAAAGCTGTAAGTAGCTCTGAGAACGTCATCATTCGTTGTACAATGCACCGATCATACATAGAAAGGAATACGATGTCAATGCCAGGCCGTTTTGTACCAGCACATCTACATAAGGAGGAAGGGAATGCTATTCTTTGGGTTGCTGAGAAGAGTTGGGATGTCAGGTTCAAGCTGAACCAAAGCAGTAATCAATTTTCACTTACTACTGGTTGGAAGAAATTTCAAGAGGAAAATACTTTGAAAAAAGGTGATAAATGTGTTTTGACGCAAATGAATTCAGAGAAACTTTCATATAGTGTAGAGATTGAACGTGCCAAAAGAGCATCAAGCCCTCACTTGGTTCAAGATTCTGAATTTCCTAAAATGAACAGCAAAAGGGAGAATCAATTCACCATCATTTTAAAGAACACTCATATGAATGAAATGAAAATACCACTGGGATTCATAAAAAAATATGTCACTGATAAGGTAACCAGTGTGGTGCTTCGAGCTAAGGGGAGAAAATGGGATGCCCAGCTATCCTATGATCCAAAGGATGATTCCACAGCATTCTCTTCTGGTTGGTCTGAATTTGTGAGGGAGTGTCACTTGAAGGAAGGAGATCAATGTGTCTTTGATCTGGTTGATAAAGAAAATTTTGTGCTTGAAGTTAAAGCTTCAAGATGCATGTTCTGA 1095 0.3927 MSSKAIHFSKRIDECSLQKGVLRMPRRFVSKHWINARISNPVALLLPGERWKVTWKKHGSDVIMFGDHWKEFTEFYSLDVEHSLWFSFRNDSRVRGTQFKVRIHESGLEIKYPGKRGISQAKGGWSEEEPLKDSRISSADKAVSSSENVIIRCTMHRSYIERNTMSMPGRFVPAHLHKEEGNAILWVAEKSWDVRFKLNQSSNQFSLTTGWKKFQEENTLKKGDKCVLTQMNSEKLSYSVEIERAKRASSPHLVQDSEFPKMNSKRENQFTIILKNTHMNEMKIPLGFIKKYVTDKVTSVVLRAKGRKWDAQLSYDPKDDSTAFSSGWSEFVRECHLKEGDQCVFDLVDKENFVLEVKASRCMF* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1613 364 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 263 361 - -
Lja3g1613 364 PANTHER B3 DOMAIN-CONTAINING 263 361 - -
Lja3g1613 364 CDD B3_DNA 270 361 IPR003340 GO:0003677
Lja3g1613 364 Pfam B3 DNA binding domain 155 244 IPR003340 GO:0003677
Lja3g1613 364 Pfam B3 DNA binding domain 275 360 IPR003340 GO:0003677
Lja3g1613 364 SUPERFAMILY DNA-binding pseudobarrel domain 146 239 IPR015300 -
Lja3g1613 364 CDD B3_DNA 154 244 IPR003340 GO:0003677
Lja3g1613 364 PANTHER B3 DOMAIN-CONTAINING 136 245 - -
Lja3g1613 364 Gene3D - 255 363 IPR015300 -
Lja3g1613 364 Gene3D - 1 106 IPR015300 -
Lja3g1613 364 Gene3D - 132 247 IPR015300 -
Lja3g1613 364 ProSiteProfiles B3 DNA-binding domain profile. 150 246 IPR003340 GO:0003677
Lja3g1613 364 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 2 127 - -
Lja3g1613 364 SUPERFAMILY DNA-binding pseudobarrel domain 268 357 IPR015300 -
Lja3g1613 364 SUPERFAMILY DNA-binding pseudobarrel domain 2 103 IPR015300 -
Lja3g1613 364 SMART B3_2 270 363 IPR003340 GO:0003677
Lja3g1613 364 SMART B3_2 8 107 IPR003340 GO:0003677
Lja3g1613 364 SMART B3_2 150 246 IPR003340 GO:0003677
Lja3g1613 364 PANTHER B3 DOMAIN-CONTAINING 2 127 - -
Lja3g1613 364 ProSiteProfiles B3 DNA-binding domain profile. 267 361 IPR003340 GO:0003677
Lja3g1613 364 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 136 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1613 Lja-Chr3 17836405 17839180 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1613 270 361 REM Transcription Factor Family AT1G49480 34.737 1.63e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja3g1613 B3 1.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1613 - - lja:Lj3g3v2576350.1 499.975