Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1612 ATGGCAACTTTCCCAAACACGGTGGCGGATGGCCGGAGCTCCGGCAAGGCACTGGAGAAATCCAACTTCTCACAGACTTGCAGCCTCCTGAGCAAGTTCTTGAAGGAGAAACGTGGTTCTGGAGATTCTGTCTCTGGAATGGGTGGGAAAATGGATCCTAAAGCTTGTACGAAAGATTTGTTAGCAAACTTGCAAAAATCAGATGGGACTTTGAGACCAAATGCTTCTTCTGCTATGGATATTCTTCCCCAGCTTGTGGAAAACCCCTGCATTAAGAAGTCTAATGTTAGGTCAGCAGGGCCTAAAACACCCCAATTGACAATATTCTATGCTGGAAAACTGTTGGTATTTGATGGTTTTGTGCCTGAGAAGGCAACAGAGGTTATGGAGTTGGCGACCAAGTTAGCATCTGATAGTTCCAGTTCTGAAGAAAATCCCCCCAAGGCTCCGGTTGTCGCTGAAAAATTGAAGGAATCAAAAGCTCCTCAGACAAACCTGGCCTCAGAAACCTCTCGACCAGGAAACCAAGCTGTTCGTTCAGATATGAGGTATCCAAGGAGAGCTTCAGTTCTTAAATTTCTTGAGAAGAGAAAAGAAAGGGTAATTGCTAAAGGACCTTACCAAGTTAACAACCCCAAGCATGAGGGTAGCAGTTCAGGAGGTGAACCTGAAGATCAGAGTTCCAAACACTTGGACCTTAACCTCTAG 708 0.4548 MATFPNTVADGRSSGKALEKSNFSQTCSLLSKFLKEKRGSGDSVSGMGGKMDPKACTKDLLANLQKSDGTLRPNASSAMDILPQLVENPCIKKSNVRSAGPKTPQLTIFYAGKLLVFDGFVPEKATEVMELATKLASDSSSSEENPPKAPVVAEKLKESKAPQTNLASETSRPGNQAVRSDMRYPRRASVLKFLEKRKERVIAKGPYQVNNPKHEGSSSGGEPEDQSSKHLDLNL* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1612 235 Pfam Jas motif 186 208 IPR018467 -
Lja3g1612 235 SMART tify_2 99 134 IPR010399 -
Lja3g1612 235 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 9 228 IPR040390 -
Lja3g1612 235 MobiDBLite consensus disorder prediction 161 177 - -
Lja3g1612 235 MobiDBLite consensus disorder prediction 135 183 - -
Lja3g1612 235 Pfam tify domain 101 132 IPR010399 -
Lja3g1612 235 MobiDBLite consensus disorder prediction 202 235 - -
Lja3g1612 235 ProSiteProfiles Tify domain profile. 99 134 IPR010399 -
Lja3g1612 235 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 9 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1612 Lja-Chr3 17825422 17827475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1612 8 217 Tify Gene Family AT1G19180 32.489 2.46e-21 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lja3g1612 tify 9.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1612 K13464 - gmx:100778559 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1612 3 17825422 17827475 Lja3g1612 3 17825422 17827475 ECH