Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1596 ATGCCCTCAAAGAAGCTTCAATGGAGATCATTGGTACTTGGCTGTTTTAAGGACAACAACTCATCCTTAGAAACCCCAAAAATAGTTTCCAAAAAGACATCTTCTACTAGACTCTCCCTCTCTGATGTAAGCAATTATTCATCACTCTCCATCATGAGTGATTTATCCAATTCTCTTGTGGGATCAAATCTTCAGATTTTCACTTATCAGCAGCTCAAAGAGGTCACACACAGCTTCAACAAATCCAATTTTCTTGGGGAAGGTGGGTTTGGGAAGGTGTATAAAGGGTTCATTGATGACAAGCTTACACTTGTTCCTAGGACAGTAGCAGTTAAGGCCTTAAATTTGGATGGAAAACAAGGCCATAGGGAGTGGTTGGCTGAAGTAGTCTTTCTGGGGCAGTTGAAGCATCGTCATCTGGTCAATTTAATTGGCTATTGCTGTGAAGATGAGCACAGGCTTCTTGTGTATGAATACATGGAGAGAGGCAATCTAGAGGAAAAGCTTTTCAAAGGTTATTTAGCAACCTTGCCTTGGCTAACAAGAATCAAAATAGCAATTGGGGCTGCAAAAGGACTTGCTTTCCTTCATGAAGAAGAGAAGCCAGTCATATACAGAGATGTTAAAGCCTCAAACATTCTTCTGGATGCTGATTTCAATGCCAAGCTCTCTGATTTTGGTTTAGCAATAGATGGACCAGATAAAGATCATACACACATTACAACTCGTGTAATGGGAACCCAAGGTTATGCTGCTCCTGAGTATATCATGTCAGGCCGTTTGACAACCATGAGCGATGTGTATAGCTTTGGAGTGGTTCTCTTAGAGCTTCTCACAGGAAGAAAATCTGTGGACAAGAAACGACCCACTAGGGAACAAGATTTGGTAGAGTGGGCAAGGCCTCTATTGAAAGATCACTATAAGCTTGAAAGAATAATGGACCCAAGGCTTGAGGATCAGTACTCAATTGAAGGGGCTAGAAAATTTGCAGCTTTGGCTCATCAATGTCTAAGCCTTCATGATAAGAGCAGGCCCACCATGAGAACCGTGGTTAAGAGCTTAGAGCCGTTGTTGAAACTGAATGATATCCCTATTGGCCATTTTGTTTATGTGGTTCCAAGTGAAGAAGGTTCAGTAGAAGTGAATGGAAAAGGAGTGGAAAATGACCGTGATGCGATCAATAAAGGCGTGGTGAAGGTTAAAGAAGAAGAGAATGAAGAGAAAAATGAGAAGGGTCACAACCGGCGTCGTCGAAAAAGTCGTGGCAGTAGACGCAGGGTTAAGCCTTTGAGGTCTCATGCTGTTCACTCTGATACTGCTCTGTATAAAACTCTTGGTACCAGTTTGTATTCTCCCAAGCAAGCAGCAGAAATAAATGGACATGGCGAATATTAG 1395 0.4208 MPSKKLQWRSLVLGCFKDNNSSLETPKIVSKKTSSTRLSLSDVSNYSSLSIMSDLSNSLVGSNLQIFTYQQLKEVTHSFNKSNFLGEGGFGKVYKGFIDDKLTLVPRTVAVKALNLDGKQGHREWLAEVVFLGQLKHRHLVNLIGYCCEDEHRLLVYEYMERGNLEEKLFKGYLATLPWLTRIKIAIGAAKGLAFLHEEEKPVIYRDVKASNILLDADFNAKLSDFGLAIDGPDKDHTHITTRVMGTQGYAAPEYIMSGRLTTMSDVYSFGVVLLELLTGRKSVDKKRPTREQDLVEWARPLLKDHYKLERIMDPRLEDQYSIEGARKFAALAHQCLSLHDKSRPTMRTVVKSLEPLLKLNDIPIGHFVYVVPSEEGSVEVNGKGVENDRDAINKGVVKVKEEENEEKNEKGHNRRRRKSRGSRRRVKPLRSHAVHSDTALYKTLGTSLYSPKQAAEINGHGEY* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1596 464 Pfam Protein tyrosine and serine/threonine kinase 82 354 IPR001245 GO:0004672|GO:0006468
Lja3g1596 464 CDD STKc_IRAK 85 357 - -
Lja3g1596 464 MobiDBLite consensus disorder prediction 403 435 - -
Lja3g1596 464 SUPERFAMILY Protein kinase-like (PK-like) 54 354 IPR011009 -
Lja3g1596 464 ProSiteProfiles Protein kinase domain profile. 79 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1596 464 Gene3D Phosphorylase Kinase; domain 1 41 159 - -
Lja3g1596 464 ProSitePatterns Protein kinases ATP-binding region signature. 85 112 IPR017441 GO:0005524
Lja3g1596 464 MobiDBLite consensus disorder prediction 414 431 - -
Lja3g1596 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Lja3g1596 464 PANTHER BNAA02G16030D PROTEIN 27 415 - -
Lja3g1596 464 SMART serkin_6 79 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1596 464 PANTHER OS01G0588500 PROTEIN-RELATED 27 415 - -
Lja3g1596 464 Gene3D Transferase(Phosphotransferase) domain 1 160 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1596 Lja-Chr3 17518093 17520554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1596 62 359 Receptor kinase-like Gene Family AT3G58690 52.303 1.98e-99 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja3g1596 PK_Tyr_Ser-Thr 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1596 - - gmx:100790454 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1596 3 17518093 17520554 Lja3g1596 3 17518093 17520554 ECH
Lja3g1596 3 17518093 17520554 Lja1g3991 1 50661277 50663832 ECH
Lja3g1596 3 17518093 17520554 Lja5g2948 5 57964712 57968347 ECH