Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1593 ATGTCTTCACAAGAGCAAGCACTAGTCTCCCTTCTCTCCCAACTAGCCCTATCCTTCGACGGCGCCGTTTTGGGTTTAGCCATAGCCTACGCCGCCGTCCGCACCATCGTCAAATTCACCGCCACCTCCGCCGCCCTTCGCAAGATCAACCAAGCCCCTTCCCTCTCCGTCTCCGACCTCCGCTCGCTCCTCACCGACGACGACGATGGCAAAATCGTTATTGTCCGCGGCACCGTTGACGCCAAGGCCGCCGTCGACGGCAGCTGGAAAACCTTCCGCCCCGGCGTCTTGGTTTCACGTGAGACCGGTGACAGAGGTGTCATCCTTCAAAGAACTGAAACGTGTATATACAATGAATGGAAGGGCTTGTTTGGGTGGACTTCTGATCTTCGAGCCATTGTTACAAGATCGTGGAGACAGCAAGAGTCTACATCCTTAAGAAAGGTGCCTTTTGTTCTCATTGATGTTGGCCGGCAGCCATATCCCGAGTATGTGGTTGTCAACTTGGATGGCTCAAGACACCCATTACCTCTGATAACAGTTTATCATAAATTGCAACCCATAAGTCCGTCTCCTTATTCATTCTTACAGGCACTCTTTGGGCATGAGTATCCGGTTGGACTACTAGATGAAGAGAAAATTCTTCCCTTGGGGAAGGATATCAGTGCTGTAGGCCTTTGCAATTTAAGAAATGGAATTGCTGAAATTAAGTCATGCAAAGATCTACCATATTTTCTGTCTGACTTGGATAAAGATCAGATGATAGTAGATCTTTCCTTCAAAACAAAAATACTATTTTGGAGTGGTATTGTTCTTGGTTCAATGTCAGTTGGGGTCCTTAGCTATGCAGTTGTGAGGAACTGGAATAAGTGGAAACAATGGAAGCAGCAAAGGCAGCTCCAGCAACAAAGGCAAACTGTCAGTGTTAATGTTGATCCTCATCTGGATGACGAGACTGAAGATGTTCCAGATGGACAGTTATGTGTTATATGCCTGATGAGGAGAAGGCGTTCTGTTTTCATTCCATGTGGGCATCTTGTATGTTGCCAAGGGTGTGCCATATCAGTTGAAGGTGAAGTGTCACCCAAGTGTCCTGTTTGTCGTCAGGAGATTCGGGATTCGGTCCGGATCTTTGAATCTTAA 1143 0.4751 MSSQEQALVSLLSQLALSFDGAVLGLAIAYAAVRTIVKFTATSAALRKINQAPSLSVSDLRSLLTDDDDGKIVIVRGTVDAKAAVDGSWKTFRPGVLVSRETGDRGVILQRTETCIYNEWKGLFGWTSDLRAIVTRSWRQQESTSLRKVPFVLIDVGRQPYPEYVVVNLDGSRHPLPLITVYHKLQPISPSPYSFLQALFGHEYPVGLLDEEKILPLGKDISAVGLCNLRNGIAEIKSCKDLPYFLSDLDKDQMIVDLSFKTKILFWSGIVLGSMSVGVLSYAVVRNWNKWKQWKQQRQLQQQRQTVSVNVDPHLDDETEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVEGEVSPKCPVCRQEIRDSVRIFES* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1593 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 380 - -
Lja3g1593 380 Pfam E3 Ubiquitin ligase 133 279 IPR022170 GO:0004842|GO:0006996|GO:0016567
Lja3g1593 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 380 IPR044247 GO:0004842
Lja3g1593 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 380 IPR013083 -
Lja3g1593 380 ProSiteProfiles Zinc finger RING-type profile. 328 368 IPR001841 -
Lja3g1593 380 SMART ring_2 328 367 IPR001841 -
Lja3g1593 380 SUPERFAMILY RING/U-box 318 373 - -
Lja3g1593 380 Pfam Zinc finger, C3HC4 type (RING finger) 326 373 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1593 325 377 C3H Transcription Factor Family AT3G06140 39.623 1.98e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1593 K15688 - gmx:100800058 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1593 3 17459738 17464588 Lja3g1593 3 17459738 17464588 ECH