Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1592 ATGACCATGGAACCAAACTCAACAACTTCAGATCACATACTGGATTGGCTTGAAGGTTCTGTCTCTTTCTTCCCATCATTCTTAGATGAACCATGTAACAACTCTGGTTACATCCAAGAGTACCACTTGTGGGATCAGTACCAAACTGATGCAAATACTGGCTCTTCACCTAATGCCACAAACAGCACCACCGCCACTATAGTTGCTACTAGTGCCACCAGCACAACATCCCTTGAGCCTTGTGGCTCTAACAACAACCAACCACTTTCTGATTTGCCCAAGAAACGAAATGCCACTGATGAATCAAGCCTCAAACCGCCACAAAACAAGAACAAGAGAATCAAGACCCGTCCAATGAATGAACCTGAGAATGGAGATGCAGTTAGAAAAAACAAGAAAGGTGGAGCTAAGGCCAATGGAAGCAACTGCAACAGTGGAAATAGCAAAGAAGGTAGATGGGCAGAGCAATTGCTCAACCCTTGTGCTGCAGCCATAGCCGGCGGAAACGTGAACCGTGTGCAGCATCTTTTATATGTTCTCCACGAGCTAGCCTCGCCTACCGGTGATCCTAACCACCGGCTCGCGGCTCATGGTCTCCGAGCACTGACACACCACTTATCCTCTTCTTCTTCATCACCTACCTCTTCAGGGACTATAACTTTTGCATCTACAGAACCAAGGTTCTTCCAGAAGTCACTGCTGAAGTTCTATGAGGTTAGTCCTTGGTTTTCCTTTCCCAATAACATAGCAAATGCTTCAATCCTGCAAGTTCTTGCTGAAGAGGCGAACATCACTTCGCGTACCCTCCACATCCTTGACATTGGAGTCTCACATGGCGTGCAATGGCCGACTCTGCTCGATGCCTTGAGTCGTCGATCCGGTGGACCGCCTTCAGTAGTTCGCCTCACGGTGGTTACAGCTGAAAATGACCAAAACATGGAGACCCCATTTTCAAAAGCTCCACCTGGTTATAACTACTATCCTAGGCTCCTTGGTTATGCTCAGTCCATAAAAATCAATTTGCAGATAAACAGGATAGAAAATCACTCATTACAGACACTGAATGCTCAGAGTATCAGTGCCTCCCCGGATGAAATTTTAATTGTCTGTGCCCAGTTCAGGCTGCATCACTTGAATCATAACAGCCCTGACGAGAGGAGTGAGTTTCTGAAGGTGTTGGGGAACATGGAGCCCAGAGGGGTGATACTAAGCGAGAACAATACAGAGTGTTGCTGCAGTGGATGTGGGAACTTCGCGGCTGGGTTCACTCGGAGAGTGGAGTACTTGTGGAGGTTCTTGGATTCAACCAGCTCAGCGTTCAAGGGTCGTGAGAGTGATGAAAGGAGAGTGATGGAAGGTGAGGCTGCGAAAGCACTGACAAACCAGCGGGAGATGAATGAAGAGAAAGAGAAATGGTGTGGAAGAATGAAAGAAGCAGGGTTTGCAGGGGAAGTGTTCGGAGAGGATGCCGTTGATGGAGGTCGAGCTTTGTTGAGGAAGTATGACAGTAATTGGGAGATGAAAGTTGAAGAAAAGAACACAAGTGTGGGACTATGGTGGAAGGGGCAACCTGTTTCTTTCTGTTCTTTGTGGAAGCTGGATGGGAATGACCAGGGTGGCACAAGCTGA 1629 0.4758 MTMEPNSTTSDHILDWLEGSVSFFPSFLDEPCNNSGYIQEYHLWDQYQTDANTGSSPNATNSTTATIVATSATSTTSLEPCGSNNNQPLSDLPKKRNATDESSLKPPQNKNKRIKTRPMNEPENGDAVRKNKKGGAKANGSNCNSGNSKEGRWAEQLLNPCAAAIAGGNVNRVQHLLYVLHELASPTGDPNHRLAAHGLRALTHHLSSSSSSPTSSGTITFASTEPRFFQKSLLKFYEVSPWFSFPNNIANASILQVLAEEANITSRTLHILDIGVSHGVQWPTLLDALSRRSGGPPSVVRLTVVTAENDQNMETPFSKAPPGYNYYPRLLGYAQSIKINLQINRIENHSLQTLNAQSISASPDEILIVCAQFRLHHLNHNSPDERSEFLKVLGNMEPRGVILSENNTECCCSGCGNFAAGFTRRVEYLWRFLDSTSSAFKGRESDERRVMEGEAAKALTNQREMNEEKEKWCGRMKEAGFAGEVFGEDAVDGGRALLRKYDSNWEMKVEEKNTSVGLWWKGQPVSFCSLWKLDGNDQGGTS* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1592 542 MobiDBLite consensus disorder prediction 73 150 - -
Lja3g1592 542 ProSiteProfiles GRAS family profile. 145 532 IPR005202 -
Lja3g1592 542 PANTHER NODULATION-SIGNALING PATHWAY 1 PROTEIN-LIKE 4 532 IPR030015 -
Lja3g1592 542 MobiDBLite consensus disorder prediction 73 93 - -
Lja3g1592 542 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 532 IPR005202 -
Lja3g1592 542 Pfam GRAS domain family 155 532 IPR005202 -
Lja3g1592 542 MobiDBLite consensus disorder prediction 114 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1592 Lja-Chr3 17457394 17459463 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1592 4 532 GRAS Transcription Factor Family AT3G13840 50.094 2.55e-168 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja3g1592 GRAS 8.3e-76 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1592 - - gmx:100810818 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1592 3 17457394 17459463 Lja3g1592 3 17457394 17459463 ECH
Lja3g1592 3 17457394 17459463 Lja3g4981 3 91973073 91975059 PCT