Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1583 ATGATGAGTACTGCTAGTGCAAGAAATAGGTCCCCTTTCACACCAACTCAGTGGCAAGAACTTGAACAACAAGCTCTTGTTTTTAAATACATGGTTACAGGAACACCAATCCCACCAGATCTCATCTTCTCCATTAAAAGAAGTCTAGACTCTTCAGTATCTTCAAGACTCTTCCCACATCATCCCATTGGGTGGGGATGTTTTGAAATGGGTTTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCAAAGGAAGCATATGCAGACTCCAAGTACTGCGAAAGACACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCAACACCTTTAACAACCACCACCGCCACAAACACACCATCTTATACTAATAGAAACCTTTCCCTCAGCAACAACAACAACATGACTTCACCATCTTCTTTCCCTTTCTCTCCACTGCCCTCATCTATTGAGTCCCAGAACTTTTCCCAGTCTTACCAAAACCCTTCTCTAAACCCCTTCTTTTACTCCCAATCAGCTTCTTCTAGAACCCCTGATTCTGATTTTTCAACTCAAGATGCCACTACCCACCAGCTGTTTATGGATTCTGCCTCTTATTCTCAAGATGAAAAGGATTTTAGGAATGTTCATGGAATGAGGGAGGGTGTGGATGAGAGAGCTTTCTTCCCAGAAGCTTCAGGGTCTGCTGCTAGTGCTAGGAGCTACCCTGACTCATATCAGCAACTATCAATGGGTTCCTATAAGTCTTATTCAAACTCCCAGTTTCAGAATATCAATGATAACCCAAGACAAGAGGAGCAGCACTTGTTTGTTTTGGGTACTGACTTCAAATCAACAAGACAAAGTAAAGAGATCAAAGAAAATGAGACAACAACACAGAAACCCCTTCACCACTTCTTTGAAGATTGGCCACCAAAGAACACTGATTCCTGGCTAGACCTTTCTTCCAACTCCAGAATCCCAACAGATGAATAA 1020 0.4294 MMSTASARNRSPFTPTQWQELEQQALVFKYMVTGTPIPPDLIFSIKRSLDSSVSSRLFPHHPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYADSKYCERHMHRGRNRSRKPVEVSSTPLTTTTATNTPSYTNRNLSLSNNNNMTSPSSFPFSPLPSSIESQNFSQSYQNPSLNPFFYSQSASSRTPDSDFSTQDATTHQLFMDSASYSQDEKDFRNVHGMREGVDERAFFPEASGSAASARSYPDSYQQLSMGSYKSYSNSQFQNINDNPRQEEQHLFVLGTDFKSTRQSKEIKENETTTQKPLHHFFEDWPPKNTDSWLDLSSNSRIPTDE* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1583 339 MobiDBLite consensus disorder prediction 295 339 - -
Lja3g1583 339 SMART QLQ_2 11 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lja3g1583 339 MobiDBLite consensus disorder prediction 118 160 - -
Lja3g1583 339 PANTHER - 2 338 IPR031137 GO:0005634|GO:0006351|GO:0032502
Lja3g1583 339 ProSiteProfiles QLQ domain profile. 12 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lja3g1583 339 MobiDBLite consensus disorder prediction 324 339 - -
Lja3g1583 339 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Lja3g1583 339 MobiDBLite consensus disorder prediction 295 319 - -
Lja3g1583 339 Pfam WRC 78 120 IPR014977 -
Lja3g1583 339 Pfam QLQ 12 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lja3g1583 339 PANTHER GROWTH-REGULATING FACTOR-LIKE PROTEIN 2 338 - -
Lja3g1583 339 MobiDBLite consensus disorder prediction 108 160 - -
Lja3g1583 339 MobiDBLite consensus disorder prediction 181 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1583 Lja-Chr3 17379724 17381852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1583 1 318 GRF Transcription Factor Family AT3G13960 40.420 7.53e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lja3g1583 WRC 3.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1583 - - vun:114166369 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1583 3 17379724 17381852 Lja3g1583 3 17379724 17381852 ECH