Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1581 ATGAGTAACTGGTTGGGGTTCTCTCTGACTCCACACTTGAGGATTGATGAAGAATTTGGGAGAGAAAACCAAGACCATGGTGGTGGAGGACCCTATCCTCCTCCTCACTTGTCTTCCATGCCTCTTCGCTCTGATGGCTCACTTTGTGTTTCTGCTGCACCTGAAGAATGGAGATATGAAAATGCAATAACTGGAGGAAATTCAAATGATGAAGGTCCAAAGCTTGAAGATTTTTTGGGGTGTTACTCAAACTCTTCTTCCCTGACTGAAACCAAAGTCTTCTGCCATGACCAAAACCAAAACCAGACCAAAATCAATGTTAATGTGCCCCCTGGGTTTTGCACCAATAGTACAGAGATTGAAACTGGGGAAAATCTCACAAACCCATCTTCATTGTACCACTCTTTCCATGCATACAATGAAAACCCACATGGCCTTATCCCAAGCAATAGCATCTACAACAAGCCATGGTTGGGTCAAACTCAGTTTGCTGATGTGAAATCTTCACCTGGTGCTAATGGGTGTAATTACCAATCTCTGAACTTGACCATGAGCCCCACTGTACCAAATGGGGTGGGTGCAATTTCCACTGTTCAGGTGAATGAAGACAATCGCAAAAGGTCCATAGCAAAATCTCAGGCTAGAGAACCAGTCCCTCGCAAATCTATTGACACTTTTGGGCAGAGAACATCTCAATACCGTGGTGTTACCAGGCATAGATGGACTGGGAGATATGAGGCTCATTTGTGGGATAACAGTTGCAGAAAGGAAGGGCAAACAAGGAAAGGAAGGCAAGTTTACCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAAGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAAAAGGAGCTTGAAGAGATGAAGAATATGACCAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGGGGTGCATCAGTGTATAGAGGCGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTCGGATAGGAAGGGTTGCAGGGAACAAGGACTTGTATCTCGGTACATTTAGCACACAAGAAGAAGCTGCTGAAGCATATGACATAGCAGCAATCAAGTTCAGGGGAACGAGTGCTGTGACAAACTTTGACATAAGTCGATACGACGTGAAGAGAATTTGCTCAAGCTCAACTCTAATTGCTGGAGATCTTGCAAAACGGTCTCCGAAAGACTCTGCTTTGGTGGTGGCGGCCCCTGCCGAGGACTTCAATTCGTGCGGTTCATCAACACCTTCTCAATCTCAGCCACCCCCTTTGGCTATAACTGATGGTGAACATTCTGATGAGTTGTCCAACATGGTGTGGAACGCCAACAGTGATGAGCAACAGCAGCCGCAGAACGAGTGCGAAAACACCAACCTCCTTGAATCATCATCATCACAGCAGGTTTCACCAGACAACAAGAATGCAATGAACCCTCAAAGTCCCAAGTGTTCTGAGGGACTAGCTAATGAGTTTGGAGTGAGTGGAGCAGATTATGGACATGGGTACTTCACCCTGCATGGACCAAAATTTGATGATGGAAACAATGAAAATGACCACAGGCTTGGGAATTTGGGTCTGGTTAATCAAGTTCCTATGTTTGCTTTGTGGAATGAATGA 1686 0.4496 MSNWLGFSLTPHLRIDEEFGRENQDHGGGGPYPPPHLSSMPLRSDGSLCVSAAPEEWRYENAITGGNSNDEGPKLEDFLGCYSNSSSLTETKVFCHDQNQNQTKINVNVPPGFCTNSTEIETGENLTNPSSLYHSFHAYNENPHGLIPSNSIYNKPWLGQTQFADVKSSPGANGCNYQSLNLTMSPTVPNGVGAISTVQVNEDNRKRSIAKSQAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAAKAYDLAALKYWGPTTHINFPLSTYEKELEEMKNMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKDSALVVAAPAEDFNSCGSSTPSQSQPPPLAITDGEHSDELSNMVWNANSDEQQQPQNECENTNLLESSSSQQVSPDNKNAMNPQSPKCSEGLANEFGVSGADYGHGYFTLHGPKFDDGNNENDHRLGNLGLVNQVPMFALWNE* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1581 561 ProSiteProfiles AP2/ERF domain profile. 232 298 IPR001471 GO:0003700|GO:0006355
Lja3g1581 561 PRINTS Ethylene responsive element binding protein signature 374 394 IPR001471 GO:0003700|GO:0006355
Lja3g1581 561 PRINTS Ethylene responsive element binding protein signature 233 244 IPR001471 GO:0003700|GO:0006355
Lja3g1581 561 CDD AP2 333 394 IPR001471 GO:0003700|GO:0006355
Lja3g1581 561 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 67 499 - -
Lja3g1581 561 MobiDBLite consensus disorder prediction 431 448 - -
Lja3g1581 561 MobiDBLite consensus disorder prediction 431 453 - -
Lja3g1581 561 MobiDBLite consensus disorder prediction 468 511 - -
Lja3g1581 561 CDD AP2 231 300 IPR001471 GO:0003700|GO:0006355
Lja3g1581 561 SUPERFAMILY DNA-binding domain 333 394 IPR016177 GO:0003677
Lja3g1581 561 SUPERFAMILY DNA-binding domain 231 300 IPR016177 GO:0003677
Lja3g1581 561 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 67 499 - -
Lja3g1581 561 Gene3D AP2/ERF domain 334 394 IPR036955 GO:0003700|GO:0006355
Lja3g1581 561 Gene3D AP2/ERF domain 231 300 IPR036955 GO:0003700|GO:0006355
Lja3g1581 561 SMART rav1_2 334 398 IPR001471 GO:0003700|GO:0006355
Lja3g1581 561 SMART rav1_2 232 304 IPR001471 GO:0003700|GO:0006355
Lja3g1581 561 MobiDBLite consensus disorder prediction 468 507 - -
Lja3g1581 561 Pfam AP2 domain 333 384 IPR001471 GO:0003700|GO:0006355
Lja3g1581 561 Pfam AP2 domain 232 290 IPR001471 GO:0003700|GO:0006355
Lja3g1581 561 ProSiteProfiles AP2/ERF domain profile. 334 392 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1581 Lja-Chr3 17356293 17360189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1581 1 420 AP2-EREBP Transcription Factor Family AT1G72570 53.007 6.35e-143 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lja3g1581 AP2 6.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1581 K09285 - gmx:100809762 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1581 3 17356293 17360189 Lja3g1581 3 17356293 17360189 ECH