Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1579 ATGGGAAGGAGTCCTTGTTGTCTTAAGGAAGGTTTGAACAAAGGAGCATGGACTGCTATGGAAGACAAGATTCTCACCGAATACATTCAGATTCATGGCGAAGGAAAATGGAGACACCTCCCCAAAAGAGCAGGTCTTAAGAGATGTGGGAAAAGTTGCAGGCTAAGATGGTTGAATTATTTAAAGCCTGGTATTAAAAGAGGAAATATCACCAATGATGAAGAAGAGCTTATTATCAGGCTTCACAACCTTCTTGGAAACAGGTGGTCTTTGATTGCTGGACGGCTTCCAGGACGAACAGACAATGAAATCAAGAACTACTGGAACACCAATATTGGAAGGAAACTAAATCAAAGTGGTGGTGCCTCAAAATGCTCCATGACAAATTGTGGTGCACGAAGCTCATTAGTTCAACATGATCAAAACATCGTGAAAACAAAAGAGTGGCGTTGTCCTTGCCCAAATAAGGGTGTTGTCCAGACAAAAGCTACAAGGTGGACTAAAGAAATGATCACCACTCAGTTACAAAATGAAAGGGCTGCTGAGAGCAATGTTGTTGTTAATGATAACAAAATGATCAAGGGATCACCGGTATCTTCACCTTCTTCAGAGAATAACAATATTGATAATCCTTTGGATTTCATGGCAGATTTTGAGATTGATTGTGATTTCTTTACGGAGTTACTCAAGATGGATTTACCTGAACTATCTTCCTTCGGAAATAACATGCTGCAAGGTAATAATGGTAACCCTAGTACAGTTGAGTTTGACAATGGTAATTTGTCTCCAGGATCATCCGATGAAAGTCACTTCCCTTGGGGTGATTCTTTATATGATAGTACAGGTTTTGATTTTCAATCAGTGGCAACTTTTATGGAGTTCGGATTGGATTGGCTATGA 900 0.3989 MGRSPCCLKEGLNKGAWTAMEDKILTEYIQIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLKPGIKRGNITNDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRKLNQSGGASKCSMTNCGARSSLVQHDQNIVKTKEWRCPCPNKGVVQTKATRWTKEMITTQLQNERAAESNVVVNDNKMIKGSPVSSPSSENNNIDNPLDFMADFEIDCDFFTELLKMDLPELSSFGNNMLQGNNGNPSTVEFDNGNLSPGSSDESHFPWGDSLYDSTGFDFQSVATFMEFGLDWL* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1579 299 Gene3D - 70 135 - -
Lja3g1579 299 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja3g1579 299 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lja3g1579 299 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja3g1579 299 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 233 - -
Lja3g1579 299 CDD SANT 16 61 IPR001005 -
Lja3g1579 299 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lja3g1579 299 Gene3D - 14 66 - -
Lja3g1579 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja3g1579 299 MobiDBLite consensus disorder prediction 242 268 - -
Lja3g1579 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja3g1579 299 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja3g1579 299 CDD SANT 71 112 IPR001005 -
Lja3g1579 299 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 233 - -
Lja3g1579 299 SMART sant 13 63 IPR001005 -
Lja3g1579 299 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1579 Lja-Chr3 17327756 17328926 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1579 1 120 MYB Transcription Factor Family AT2G16720 73.333 1.49e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g1579 Myb_DNA-binding 7.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1579 K09422 - gmx:100809225 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1527 4 14242180 14243690 Lja3g1579 3 17327756 17328926 ECH
Lja6g2012 6 48205400 48206838 Lja3g1579 3 17327756 17328926 ECH
Lja3g1579 3 17327756 17328926 Lja3g1579 3 17327756 17328926 ECH