Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1578 ATGGGTAGACGTCCCTGCTGTCCCAGGGAAATCAATAAGGGTGCTTGGTCTCGAGAAGAAGATGAAGCCCTCTCCAGATATATCACCATTCATGGAGAAGGGAAATGGCAGAAGGTTGCCCAAAATGCAGGTTTGAAGCGGTGTGGAAAGAGCTGTAGACAAAGATGGTTGAATTACCTTAAACCTGGTATAAAGAGAGGTGACATCTTTGAGGATGAAGAGGACATGATCATCAGACTTCATCGTCTTCTTGGTAACAGATGGGCTTTGATAGCTAAGAGGCTTCCGGGACGAACAGACAATGAAATCAAGAACTACTGGAATACCAATCTGTCTAAGAAGTTACATAAACAGCATTCACTTCAACATAGCCAATACCCTGATCACAAATATTGTGAACAAGAGAAGATCCAAAGAATCCATGTAGCACCAGAAGCTCCAAGGCCTAGAAGAGTTAAGGCTTTTAAATACAACAACAATTTTATTTTGGAGAGTACTAATAATGGTTGTAAGTGTGAAAAGCGTAGCAGTGCTAGTCCCTCAAACAAAATAGAGGGTGGTGGTGATGAAGCTTCACTTATTGATTTCTTCATTGATATTGATCAAAGCCAAATGCTGGTTGCTGATGATGATGACTTCCACTCAAAACCAAATGCTACCTTATCTCCTAATTCTGATCACTGTAACCATGCTTCATCAGAGAAAATTGACTCTCTGGATGTAGAGCTCAAGAAGATGGCTTCCTTTCTTGGAATTGAAAATATATGA 768 0.4062 MGRRPCCPREINKGAWSREEDEALSRYITIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDIFEDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLHKQHSLQHSQYPDHKYCEQEKIQRIHVAPEAPRPRRVKAFKYNNNFILESTNNGCKCEKRSSASPSNKIEGGGDEASLIDFFIDIDQSQMLVADDDDFHSKPNATLSPNSDHCNHASSEKIDSLDVELKKMASFLGIENI* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1578 255 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 230 - -
Lja3g1578 255 Gene3D - 70 141 - -
Lja3g1578 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Lja3g1578 255 CDD SANT 71 111 IPR001005 -
Lja3g1578 255 SMART sant 65 113 IPR001005 -
Lja3g1578 255 SMART sant 12 62 IPR001005 -
Lja3g1578 255 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lja3g1578 255 CDD SANT 15 60 IPR001005 -
Lja3g1578 255 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Lja3g1578 255 Gene3D - 13 65 - -
Lja3g1578 255 PANTHER MYB TRANSCRIPTION FACTOR 1 230 - -
Lja3g1578 255 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lja3g1578 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 64 IPR017930 -
Lja3g1578 255 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Lja3g1578 255 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1578 Lja-Chr3 17319062 17321316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1578 1 115 MYB Transcription Factor Family AT2G16720 64.655 5.27e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g1578 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1578 K09422 - gmx:547568 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1578 3 17319062 17321316 Lja3g1578 3 17319062 17321316 ECH