Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1570 ATGTTTCCGTTCCCTGCGATTCTGATACTTGGAGCATTTCTAATTGCCTTGACATTTTTCACCCTCACTATGCTTGGATGGTGCTGTAATACCAATCCCTTTTCACCTCCTCCTCCATCTTTTGCTGACAAGATATCTGGTTTCATGAGTTTAGAGTCACATTCTATCACATTCATGTACAAGGAGGCAGAGGCTGCAACAACAGAAGGCACAAACCAGACTGAATGTGTTATCTGCTTAACAGCATTTCAAGAAGACGAAAGTGTCCGAAAGCTTCATAGTTGCAAGCACATCTTCCACACATGTTGTATTGATAAGTGGCTTGGCTCTCAGACCGGTTGTCCACTGTGCCGCACTCAGATTGACAAAGTGGCATCCCCAAAGGGGACAGGGACAAATAATGAGATGATTACGGTCATAGTTAACTCCTGA 432 0.4398 MFPFPAILILGAFLIALTFFTLTMLGWCCNTNPFSPPPPSFADKISGFMSLESHSITFMYKEAEAATTEGTNQTECVICLTAFQEDESVRKLHSCKHIFHTCCIDKWLGSQTGCPLCRTQIDKVASPKGTGTNNEMITVIVNS* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1570 143 ProSiteProfiles Zinc finger RING-type profile. 76 118 IPR001841 -
Lja3g1570 143 Pfam Ring finger domain 75 118 IPR001841 -
Lja3g1570 143 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 45 134 - -
Lja3g1570 143 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 45 134 IPR044675 -
Lja3g1570 143 SUPERFAMILY RING/U-box 75 125 - -
Lja3g1570 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 126 IPR013083 -
Lja3g1570 143 SMART ring_2 76 117 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1570 Lja-Chr3 17235581 17236012 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1570 5 142 Rapid Response to Elicitors AT3G05200 29.677 5.15e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1570 - - gmx:102661636 172.555