Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1566 ATGAGTCTCAACAATACCAAACAAAATCATCATCAACTTCCCACTACAGAGGTTGATGATGCTTACCAAGCTGCTTTGGTGCTATGTTTTAGTAGAATCATGCCTGCAATATTAAATGCTGCTATTGACCTCAATTTGTTTGAGATCATAGCAAAGGCAAAAAAGTGTGGTTCAATGTCTGCCACTGAGATTGCTTCTCTTCTTCCAAATTACCAGCAGCACCAAGAATTGGCTAATAGGCTTGAACGCATGTTGCCTGTGTTGGCTAGTTATTCTCTTTTGAATTGCTCCATTCGAACCAATGAAGATGGAAAGAGAGAGAGGGTTTATGGTCTCTCACCCGTTGGTGAATACTTTGCGTGTGATAGCAACAATGGAGGAGGCTCTTTGGGTCCACTCTCAACTTTGATGCACAGAGGATATCACGATATTTGGAATGATGCAAAGGATGCAATTGTGGACCCTAATAACAACAACCATTTCCAGAAACTTCACGGCTTGTCCAATTACCAGTATTTGGAGAAAGATACAGAACTGAATCTCTTGTTTAACAAAGCAATGGCCCAAGGTGGCCCATTAGAAATGAAACGAATCCTTGAACTATATAAAGGATTTGAGGGACTATCAACATTGGTTGATGTAGGTGGTGGAGTTGGTCAGGCCTTACAAAAAATTATCTCTCAATATCCTTCAATAAAAGGAATTAATTTTGATTTGCCTCAAGTAATTCAACATGTAATACCTCTTCCAGGGATTGAGCATGTTCCAGGAGATATGTTTAAAAGCGTTCCAAAGGGTGATGCCATTTTGCTAAAGCTTGTATGCCATAATTGGGCAGATGAAGAATGTGTGATGATTTTAAAAAACTGCTACAAAGCTTTGCCAAAAGGTGGAAAGGTGATTGTTCTGGACTACATAATGCCAGAAGTCCCAAATCCAAGCAACATCTCTAAGCATATTTGTGCTATTGATAATGTAATGTTTCTTATAAATGGTGGAAAGGAAAGAACAGAGGATGAATTTAAGATTTTGTGCATGAGGGCTGGATTTTCCAAATTTTGTGTTCCTTGCAGTGATTTCTTAGCTATATCAGGAGTGATGGAGTTTCACAAATAA 1116 0.388 MSLNNTKQNHHQLPTTEVDDAYQAALVLCFSRIMPAILNAAIDLNLFEIIAKAKKCGSMSATEIASLLPNYQQHQELANRLERMLPVLASYSLLNCSIRTNEDGKRERVYGLSPVGEYFACDSNNGGGSLGPLSTLMHRGYHDIWNDAKDAIVDPNNNNHFQKLHGLSNYQYLEKDTELNLLFNKAMAQGGPLEMKRILELYKGFEGLSTLVDVGGGVGQALQKIISQYPSIKGINFDLPQVIQHVIPLPGIEHVPGDMFKSVPKGDAILLKLVCHNWADEECVMILKNCYKALPKGGKVIVLDYIMPEVPNPSNISKHICAIDNVMFLINGGKERTEDEFKILCMRAGFSKFCVPCSDFLAISGVMEFHK* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1566 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 371 IPR016461 GO:0008168
Lja3g1566 371 PANTHER O-METHYLTRANSFERASE 4 371 IPR016461 GO:0008168
Lja3g1566 371 CDD AdoMet_MTases 210 307 - -
Lja3g1566 371 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 4 371 - -
Lja3g1566 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 137 356 IPR029063 -
Lja3g1566 371 PIRSF O-mtase 1 371 IPR016461 GO:0008168
Lja3g1566 371 SUPERFAMILY "Winged helix" DNA-binding domain 17 123 IPR036390 -
Lja3g1566 371 Gene3D - 2 119 IPR036388 -
Lja3g1566 371 Gene3D Vaccinia Virus protein VP39 130 371 IPR029063 -
Lja3g1566 371 Pfam Dimerisation domain 37 89 IPR012967 GO:0046983
Lja3g1566 371 Pfam O-methyltransferase domain 145 351 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1566 Lja-Chr3 17201093 17203630 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1566 12 360 Monolignol Biosynthesis Gene Families AT5G54160 45.609 3.32e-96 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1566 - - aprc:113869089 516.538