Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1562 ATGTTGACTTGCATAGCTTGTTCCAAGCAGCTTAATAATGGATCTCTTCAACCAGAAGAAGAGGAAGAAGCTGTGCAAACACCCAGCACCAAGCAAGCCATCAAGGCTCTCACTGCTCAGATCAAGGACATGGCAGTGAAGGCTTCTGGGGCCTATAAGAATTGCAAGCCTTGTTCAAGATCTTCCAATAATAACAAGAATCGAAAGTATGCTGACTCTGATGTGGGCTCAGATTCAGCAAGGTTCCACATGGCCTACCACCGAACTGGTAGCTCCAATTCAACCCCAAGGATGTGGGGTAAGGAAATGGAAGCAAGACTGAAAGGGCTTTCCAGTGGGGAAGGAACACCAGCATCAGTGAGTGGACGTACTGAGTCAGTGATGTTAACGGAGGAGGATGAGCCCAGGGAATGGATTGCACAAGTGGAGCCTGGTGTGCTTATTACTTTTGTTTCATTGCCTCAGGGTGGGAATGATCTGAAGAGGATACGGTTCAGCCGTGAAATGTTCAATAAATGGCAAGCACAGAGGTGGTGGGCAGAGAATTACGACAAGGTCATGGAGTTGTACAATGTTCAAAGGTTCGATCAAAATGCAGTTCCTCTTCCAACCCCACCTAGATCTGAGGATGAGAGCTCAAGGATTGAATCTGCGAGGGACAGCCCTGCCACTCCTCCTCTCAGTAAAGAGCGCCTGCCCCGTCATCTTCACCAACCAATGGGAATGGGTTACTCCTCATCAGATTCACTGGATCACCACCAAAGGCAACCTCAACCTCGTTATGAAACAAGCGGTTTAGGATCAACACCTAATCTTTCCACCATTAGTGTGCCAAAGACTGAGAGATCATCCATTGAAGGTTCTGTAAGGACAAGTTCCTCGGGAGAGGAAGATCGCTCAGGTGAGCTTTCAATCAGCAATGCCAGTGAAATGGAAACCGAATGGGTCGAACAGGATGAACCAGGAGTATACATCACCATCAGAGCGCTGCCAGGTGGAGCTAGAGAACTTAGGCGTGTCCGGTTCAGCCGCGAAAAATTTGGAGAAGTGCACGCCAGATTGTGGTGGGAAGAGAACCGTGCTAGGATACAAGAACAATACTTGTGA 1107 0.4833 MLTCIACSKQLNNGSLQPEEEEEAVQTPSTKQAIKALTAQIKDMAVKASGAYKNCKPCSRSSNNNKNRKYADSDVGSDSARFHMAYHRTGSSNSTPRMWGKEMEARLKGLSSGEGTPASVSGRTESVMLTEEDEPREWIAQVEPGVLITFVSLPQGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFDQNAVPLPTPPRSEDESSRIESARDSPATPPLSKERLPRHLHQPMGMGYSSSDSLDHHQRQPQPRYETSGLGSTPNLSTISVPKTERSSIEGSVRTSSSGEEDRSGELSISNASEMETEWVEQDEPGVYITIRALPGGARELRRVRFSREKFGEVHARLWWEENRARIQEQYL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1562 368 MobiDBLite consensus disorder prediction 259 291 - -
Lja3g1562 368 MobiDBLite consensus disorder prediction 298 312 - -
Lja3g1562 368 ProSiteProfiles BRX domain profile. 313 368 IPR013591 -
Lja3g1562 368 Pfam Transcription factor BRX N-terminal domain 22 58 IPR027988 -
Lja3g1562 368 MobiDBLite consensus disorder prediction 198 315 - -
Lja3g1562 368 ProSiteProfiles BRX domain profile. 136 191 IPR013591 -
Lja3g1562 368 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 368 IPR044532 -
Lja3g1562 368 Pfam Transcription factor regulating root and shoot growth via Pin3 312 367 IPR013591 -
Lja3g1562 368 Pfam Transcription factor regulating root and shoot growth via Pin3 136 190 IPR013591 -
Lja3g1562 368 PANTHER PROTEIN BREVIS RADIX-LIKE 3 1 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1562 Lja-Chr3 17140014 17144088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1562 1 368 Major Intrinsic Protein MIP AT1G31880 46.632 2.62e-103 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1562 - - gmx:100805480 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1562 3 17140014 17144088 Lja3g1562 3 17140014 17144088 ECH