Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1557 ATGTCCACTAGTTATACCATGAAGATGAGTTCTTTACCACAACAATGTCACCAGACTAAGCCACTGAGTTTGAAATTTCAAGACCAAGATTCTTGTTCAACTCAATCAACAGGGCAATCTTATCCGAAAGTTGGTTCAGCACAATCAGGTCAAATTTCTGTTCAGTATAGCAATTCTTCTGATTGTTCAACAGTAAGCAAAACTGGGGAAGAGAGTGTGGAAGGTTTCATCAGGTCATCTGCAGTGACTCGGGATTTTACCTTCCCTCCTTCACAATTGAGCTACAACCAATCACTTGCGAATATTGCTTTCCACCATGCTGAGCCATGCTTCAGTGGCCTACTAGCTGCTCCATATGGGCCACAGCCTAATATTCACCATGCCCAGCTAATAGGAATGGCTCCTGTTCGAATTCCTCTGCCGCTTGATCTCTGTGAGGAACCCATATATGTGAATGCAAAGCAGTACCATGCTATTCTCAGGCGCAGACAGTATCGTGCAAAGCTCGAAGCACAGAACAAACTCGCCAAAAATCGGAAACCATATCTTCACGAGTCACGCCATCTACATGCAATGAAAAGAGCTAGAGGTTCTGGCGGACGTTTCCTGAACACAAAAAAGCTCCAAGAGTCAAAGCTCACTTCAAAGAACCATGGCTTTGGTGCGTCCAATTGTACTCAGTTGAATCTGAGCGGAAACATGTCAGAATCTGAGGTCGGTCGAGTGGAAAACTACGGAGATGGTGTTTCCGCAACCACCTGTTCTGATGTTACAAGTGGATCTAACAGTGACTGCATCCTCAAGCAACAGGAATTAGAGTTCAGACTGTGTGGTTACCCTTCTCATATTGGAAGAAATATGCAGGGTTACGCGGCAAACATGGGTAGTGGTGGTGGTGCAAATCAACACCATCTATCAGTTCTTCTCTGA 930 0.4484 MSTSYTMKMSSLPQQCHQTKPLSLKFQDQDSCSTQSTGQSYPKVGSAQSGQISVQYSNSSDCSTVSKTGEESVEGFIRSSAVTRDFTFPPSQLSYNQSLANIAFHHAEPCFSGLLAAPYGPQPNIHHAQLIGMAPVRIPLPLDLCEEPIYVNAKQYHAILRRRQYRAKLEAQNKLAKNRKPYLHESRHLHAMKRARGSGGRFLNTKKLQESKLTSKNHGFGASNCTQLNLSGNMSESEVGRVENYGDGVSATTCSDVTSGSNSDCILKQQELEFRLCGYPSHIGRNMQGYAANMGSGGGANQHHLSVLL* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1557 309 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 2 278 - -
Lja3g1557 309 SMART cbf3 144 205 IPR001289 GO:0003700|GO:0006355
Lja3g1557 309 ProSitePatterns NF-YA/HAP2 subunit signature. 150 170 IPR018362 GO:0003677|GO:0016602
Lja3g1557 309 ProSiteProfiles NF-YA/HAP2 family profile. 145 205 IPR001289 GO:0003700|GO:0006355
Lja3g1557 309 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 147 202 IPR001289 GO:0003700|GO:0006355
Lja3g1557 309 Gene3D - 145 206 - -
Lja3g1557 309 PRINTS CCAAT-binding transcription factor subunit B signature 179 202 IPR001289 GO:0003700|GO:0006355
Lja3g1557 309 PRINTS CCAAT-binding transcription factor subunit B signature 148 170 IPR001289 GO:0003700|GO:0006355
Lja3g1557 309 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 278 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1557 Lja-Chr3 17072676 17077198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1557 13 307 CCAAT-HAP2 Transcription Factor Family AT1G17590 43.667 4.36e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lja3g1557 CBFB_NFYA 1.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1557 K08064 - gmx:100500765 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1557 3 17072676 17077198 Lja3g1557 3 17072676 17077198 ECH
Lja3g5001 3 92135253 92140357 Lja3g1557 3 17072676 17077198 PCT