Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1555 ATGGACTCGCGCGCACAGTATAATCCTCGCACCGTCGAAGAGGTTTTCAGGGATTTCAAGGGTCGTCGCGCTGGTCTCATCAAAGCTCTTACTTCCGATGTTGAAGATTTCTATAGCCAATGTGATCCTGAGAAAGAGAATTTGTGCTTGTATGGCTTTCCAAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCACCAGAACTTCCTGAGCCTGTGCTAGGCATTAACTTTGCTAGGGATGGCATGCACGAAAAAGATTGGTTATCCCTAGTTGCTGTCCATAGTGATGCATGGTTACTTGGTATTGCCTTCTATTTCGGAGCCAGATTTGGGTTTGACAAAGCTGACAGGAAACGCCTTTTCAATATGATCAATGAACTGCCAACAATATTTGAAGTTGTTACTGGTGCTGCAAAGAAACAAGTTAAGGAGAAGTCTTCAGCTTCAAACCACAGCGGCAGCAAATCCAAGTCCAGCTCTAAAGCACGGGCTCCAGAATCTCAGGTTAGGCAGTCAAAGCCATTGCCACCAAAAGACGAGGATGAAGAACTGGATGAGCAAGATGACGATGATGATGATGAGGAGGATGATGATGAGCATGGAGAGACCTTGTGTGGGGCTTGTGGTGACCATTATGGCACTGATGAATTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTTCACGGGAAGTGTGTGAAGATCACTCCTGCTAGGGCTGAGCATATCAAGCAATACAAGTGCCCATCATGCACTAACAAGAGAGTTCGCACTTGA 786 0.4593 MDSRAQYNPRTVEEVFRDFKGRRAGLIKALTSDVEDFYSQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMHEKDWLSLVAVHSDAWLLGIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKSSASNHSGSKSKSSSKARAPESQVRQSKPLPPKDEDEELDEQDDDDDDEEDDDEHGETLCGACGDHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCTNKRVRT* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1555 261 Pfam PHD-finger 208 257 IPR019787 -
Lja3g1555 261 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Lja3g1555 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 256 IPR013083 -
Lja3g1555 261 MobiDBLite consensus disorder prediction 150 170 - -
Lja3g1555 261 CDD PHD_AL_plant 207 257 IPR044104 -
Lja3g1555 261 SUPERFAMILY FYVE/PHD zinc finger 196 258 IPR011011 -
Lja3g1555 261 MobiDBLite consensus disorder prediction 184 203 - -
Lja3g1555 261 ProSiteProfiles Zinc finger PHD-type profile. 205 257 IPR019787 -
Lja3g1555 261 SMART PHD_3 207 255 IPR001965 -
Lja3g1555 261 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 260 - -
Lja3g1555 261 PANTHER CPG BINDING PROTEIN 6 260 IPR045104 GO:0006355|GO:0042393
Lja3g1555 261 ProSitePatterns Zinc finger PHD-type signature. 208 254 IPR019786 -
Lja3g1555 261 MobiDBLite consensus disorder prediction 145 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1555 Lja-Chr3 17064288 17068213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1555 5 261 Alfin-like Transcription Factor Family AT3G42790 71.984 2.58e-123 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lja3g1555 Alfin 5.3e-68 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1555 3 17064288 17068213 Lja3g5002 3 92142885 92146695 ECH
Lja4g1539 4 14332096 14335706 Lja3g1555 3 17064288 17068213 ECH
Lja6g2026 6 48361748 48365637 Lja3g1555 3 17064288 17068213 ECH
Lja3g1555 3 17064288 17068213 Lja3g1555 3 17064288 17068213 ECH
Lja3g5002 3 92142885 92146695 Lja3g1555 3 17064288 17068213 PCT