Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1553 ATGAGTATGACTGTGGCGGCGGAGGAAGAATCTGGCGGCGAAGAGGTTCTTCATCTCCCGGCCGAAATTGATTGGCAGATGCTGGATAAATCCAAGTTTTTCTTTCTTGGTGCTGCCCTTTTCTCTGGGGTTTCTGCAACCCTGTATCCTGCTGTTGTTTTGAAAACCAGGCAGCAAGTGGCTCAGACTCATGTTTCTTGCATCAAGACTGCATTTACATTGATTAGGGGTGAGGGGTTTCGCGCGCTGTATCGCGGGTTTGGGACTTCGTTGATGGGTACGATCCCTGCGAGAGCTTTATACATGGCTGCCCTTGAGGTTACTAAGAGCAATGTGGGGACTGCGACGGTTAGGTTTGGTTTTGCTGAACCGACTGCTGCTGCGATTGCCAGTGCGGCTGCTGGGTTGAGTGCAGCTATGGCAGCTCAGCTTGTGTGGACCCCGGTTGATGTTGTGAGCCAGAGGTTGATGGTACAAGGTTGTTGTAATTCCAGTAATCCGAAGGGTTCTGCTGTTAGATATATCAATGGGATTGATGCTTTCAGGAAAATTCTCAATACGGATGGTCCTAGGGGGTTGTATAGGGGTTTTGGGATATCAATTTTGACCTATGCACCTTCAAATGCAGTTTGGTGGGCTTCATATTCTGTTGCACAGAGGATGGTTTGGGGTGGAGTTGGGTACTACTTGTGCAACAAGAAGGGTGAGGAAACTAATAATGCATTGAGGCCAGATGCAAAAACTGTTATGGCAGTTCAGGGAGTCAGTGCAGCAATGGCAGGTGGCATGTCTGCTTTGATCACCATGCCATTGGATACAATCAAGACAAGACTGCAGGTCTTGGATGGCGACGAGAACGGCCGCCGCGGACCAACCATTATGCAGACAGTCAGGAATCTGGTTAAGGAAGGTGGTTGGACGGCGTGTTATAGAGGATTGGGACCTCGATGGGCTTCAATGTCAATGTCCGCGACAACAATGATCACCACCTATGAGTTCCTAAAACGGCTTTCCGCAAAAAATCAGGATGTTCTGACATGA 1041 0.4899 MSMTVAAEEESGGEEVLHLPAEIDWQMLDKSKFFFLGAALFSGVSATLYPAVVLKTRQQVAQTHVSCIKTAFTLIRGEGFRALYRGFGTSLMGTIPARALYMAALEVTKSNVGTATVRFGFAEPTAAAIASAAAGLSAAMAAQLVWTPVDVVSQRLMVQGCCNSSNPKGSAVRYINGIDAFRKILNTDGPRGLYRGFGISILTYAPSNAVWWASYSVAQRMVWGGVGYYLCNKKGEETNNALRPDAKTVMAVQGVSAAMAGGMSALITMPLDTIKTRLQVLDGDENGRRGPTIMQTVRNLVKEGGWTACYRGLGPRWASMSMSATTMITTYEFLKRLSAKNQDVLT* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1553 346 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 111 IPR018108 -
Lja3g1553 346 ProSiteProfiles Solute carrier (Solcar) repeat profile. 248 337 IPR018108 -
Lja3g1553 346 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 3 343 - -
Lja3g1553 346 Pfam Mitochondrial carrier protein 252 341 IPR018108 -
Lja3g1553 346 Pfam Mitochondrial carrier protein 40 111 IPR018108 -
Lja3g1553 346 Pfam Mitochondrial carrier protein 128 222 IPR018108 -
Lja3g1553 346 Gene3D Mitochondrial carrier domain 32 344 IPR023395 -
Lja3g1553 346 ProSiteProfiles Solute carrier (Solcar) repeat profile. 126 221 IPR018108 -
Lja3g1553 346 SUPERFAMILY Mitochondrial carrier 26 334 IPR023395 -
Lja3g1553 346 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Lja3g1553 346 PRINTS Mitochondrial carrier protein signature 86 106 IPR002067 GO:0055085
Lja3g1553 346 PRINTS Mitochondrial carrier protein signature 257 279 IPR002067 GO:0055085
Lja3g1553 346 PRINTS Mitochondrial carrier protein signature 194 212 IPR002067 GO:0055085
Lja3g1553 346 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 3 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1553 Lja-Chr3 17055979 17057661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1553 6 343 Chloroplast and Mitochondria Gene Families AT1G72820 76.385 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1553 K15121 - gmx:100784616 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1553 3 17055979 17057661 Lja3g1553 3 17055979 17057661 ECH