Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1549 ATGCAGAGACCAATGCCGGAGGGACCGGGGCCCACCATCATTGCCATAAGTGCCGGCCGGAACAGCCCACACGCCGTCAAATGGGCAGTGGAACACCTTCTCAACAAAAACTCCTCTTGCACCCTCATTCATGTCCGTACCAAGTCCATCTATCCTCATGATGCTGATCATGTCCTTAAACATGGTCGTCCCCCAACTATGGAAGAATTGCACCAGCTCTTTCTTCCCTTCCGAGGATTCTGTGCTCGAAAAGGGATTGAAGCAAAGGAGTTGGTCCTGGATGACATTGATGTTCCGGGCGCCCTTACTGAATATGTCATTCAAAACTGTATCACCGATGTTGTTGTTGGTGCTCATGCTTCCAATTGGAGTGCTCTATTAAGGAGATTTAAAGATGCAGATGTGGCAAGCAGCTTAGCAAAATCTTTGCCTATGTCATGCACATTACATGTTATATCAAAAGGAAAAGTACAAAATGTGAGACCAACAGGTCATCCTCACAATCACAATGCCCATCCTCAGAATATTAACACCACACACACAAAATCTCTAAGAGACATAGTCACGCTCTTGGAAAACACTCCAATGGTTCATCCAAACAAGTTTCTTGCCGATGATCCTGATTCTGAAGCTATAAACAGAACATTCAAAGACGCTACCGGGCAAGACTCACACAATGTTTTGGAATCTTTACGCGAAATAAAAGATGTTATACTAACAACATCAAGTAAGTCCCATGAAGATACCAATTCACCAAGAGGTCCAATACTATCAGCAGGAAACTCCTCATCATTAAACTCCTCAAATCGGAGCTCTCCTTCCAACAGTAGTGACAGTTCAGGAAAATTTAGCCTTCATTTGACTGACACTTCATATGAAATAGTTGCAAACAAAGACACCTCTAACTGCATCCCTTCTTCAAAACCCCTAATAAGCTTGGAGGCAGAAATGAAGAAATTAAAACTAGAACTGAAGAAAACAACTCAGCAGTATGGTTTAGCTTGCAAAGAAGCAGCTTTAGCTAAACTGAAGGCGAAGGAGCTTGAAAAATTTAAGCAAGCTAAAGGACGCAATGTAGAAAAAGCTAAGCTTGCTGAAGAGGCTGCATTGACTCTAGCAGAGGTAGAGAGGCAGAAAGCCAAGGCGGCTTTGGAGTCGGCAGAGGTGTCGCAGCGCCTGGCACAATTGGAAATAGAAAAGAGAAAGCAAGCGGAAATAATAGCCAGACGTGAGGAAGAAGAGAGGATGAAAGTACTGCAAGAAGCCATATGTAATAGTCTTGCATATAGAAGATACAATATTAAAGAAATTGAATCAGCAACTAATGGCTTCGACAATGATCTCAAAATTGGTGAAGGGGGATATGGACCAGTTTTCAGAGCAACGCTTGATCACACTGTTGTAGCCATTAAGGTTGTGAGACCAGACTTAGCTCATGGAGAGAGGCAATTTCAACAAGAGGTTCTTGTGTTGAGCACCATAAGACATCCAAGCATGGTTCTCCTCCTCGGCGCGTGCCCGGAGTTCGGGTGCCTGGTGTACGAGTACATGGAAAACGGGAGCTTAGAAGATCGTCTGTTCCAGAAAGACAACACTCCACCAATTCCAAGTAAAACTCGTTTCAAGATAGCAACAGAGATCGCTGCAGGCCTTCTCTTCCTCCACCAGAGAAAGCCAGAGCCACTAGTTCACCGTGACCTGAAACCCGCAAACATTCTCCTAGACAGAAACTACGTGAGCAAGATTAGCGACGTGGGCTTAGCAAGACTCGTCCCGCCTTCCGTCGCCAACAAAACCACCCAGTATCGCATGACCGGTGCCGCCGGAACGTTTTGCTACATCGACCCGGAGTATCAGAAAACGGGGTTGTTGGGTGTGAAATCAGATATATATTCGTTTGGTGTGGTGCTGTTGCAGATTATCACAGCGAAGGCTCCAATGGGTTTGTCGCATTTGGTGGAGGAAGCGATTGAGGATGGGAGTTTCAGAGAGATTCTTGATCCGACGGTGGATTGGCCAGTGGAAGAGGCTATGGAGTTTGCTAAGTTGGGGTTGAAGTGTTGTGAGTTGAGACGACGTGACAGGCCTGATCTTAGGACTGTTGTTCTGCCGGAGCTGAGTCGAATATCACGGATGTGGGACTCGGAAAATTGTCATGTTTCCGAATGA 2169 0.456 MQRPMPEGPGPTIIAISAGRNSPHAVKWAVEHLLNKNSSCTLIHVRTKSIYPHDADHVLKHGRPPTMEELHQLFLPFRGFCARKGIEAKELVLDDIDVPGALTEYVIQNCITDVVVGAHASNWSALLRRFKDADVASSLAKSLPMSCTLHVISKGKVQNVRPTGHPHNHNAHPQNINTTHTKSLRDIVTLLENTPMVHPNKFLADDPDSEAINRTFKDATGQDSHNVLESLREIKDVILTTSSKSHEDTNSPRGPILSAGNSSSLNSSNRSSPSNSSDSSGKFSLHLTDTSYEIVANKDTSNCIPSSKPLISLEAEMKKLKLELKKTTQQYGLACKEAALAKLKAKELEKFKQAKGRNVEKAKLAEEAALTLAEVERQKAKAALESAEVSQRLAQLEIEKRKQAEIIARREEEERMKVLQEAICNSLAYRRYNIKEIESATNGFDNDLKIGEGGYGPVFRATLDHTVVAIKVVRPDLAHGERQFQQEVLVLSTIRHPSMVLLLGACPEFGCLVYEYMENGSLEDRLFQKDNTPPIPSKTRFKIATEIAAGLLFLHQRKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVANKTTQYRMTGAAGTFCYIDPEYQKTGLLGVKSDIYSFGVVLLQIITAKAPMGLSHLVEEAIEDGSFREILDPTVDWPVEEAMEFAKLGLKCCELRRRDRPDLRTVVLPELSRISRMWDSENCHVSE* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1549 722 MobiDBLite consensus disorder prediction 242 282 - -
Lja3g1549 722 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 12 712 - -
Lja3g1549 722 Coils Coil 310 330 - -
Lja3g1549 722 SMART serkin_6 444 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1549 722 SUPERFAMILY Protein kinase-like (PK-like) 426 702 IPR011009 -
Lja3g1549 722 PANTHER OS02G0152300 PROTEIN 12 712 - -
Lja3g1549 722 ProSiteProfiles Protein kinase domain profile. 444 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1549 722 Gene3D HUPs 13 149 IPR014729 -
Lja3g1549 722 Gene3D Transferase(Phosphotransferase) domain 1 517 719 - -
Lja3g1549 722 Pfam Protein tyrosine and serine/threonine kinase 449 702 IPR001245 GO:0004672|GO:0006468
Lja3g1549 722 Coils Coil 365 421 - -
Lja3g1549 722 MobiDBLite consensus disorder prediction 243 282 - -
Lja3g1549 722 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 14 128 - -
Lja3g1549 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 562 574 IPR008271 GO:0004672|GO:0006468
Lja3g1549 722 CDD STK_N 14 155 - -
Lja3g1549 722 Gene3D Phosphorylase Kinase; domain 1 423 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1549 Lja-Chr3 16879027 16885008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1549 8 709 Receptor kinase-like Gene Family AT1G78940 45.455 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lja3g1549 PK_Tyr_Ser-Thr 5.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1549 - - gmx:100799611 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1549 3 16879027 16885008 Lja3g1549 3 16879027 16885008 ECH
Lja3g1549 3 16879027 16885008 Lja3g5005 3 92159331 92166345 PCT