Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1526 ATGTCTTCTTCTTCTTCCAAAAAGCATGATGTATTTATCAGCTTTCGAGGTGAAGACACCCGAACCAATTTCACTAGCCATCTTCTTACTGCTCTCGATGACAACAGTATCCGAACATTCATAGACTACAAGCTTCAAAAAGGAGATGATGTTTGGCCATCACTTTCCCAAGCAATCCAGGACTCACGCATATCCATTGTTGTTTTCTCAGAGAATTATGCTTCATCGACATGGTGCTTGGAAGAACTGGTCAAGATAATGGAATGCCGGAAACATCAGAGTCAGGTTGTGATACCTGTGTTCTATGAAATTGATCCATCATGCGTGCGGAACCAGACAGGGAGTTACGAGGTAGCATTTACAAACCATGAACAAGACCTCAATGACAATGATTCCGATCAACACAAACTACGTAGGTGGAGAGTTGCTCTTACCCAAGCTGCCAATATTTCTGGATGGGACACTCGAAGTCGAACCCTCAGGGATGACTCTCAAGCCATCTACAACATTGTCAAAGATGTTTCACAAAAGCTATACTTCCTGAACCCTGATGAACTGAAAGGCATTGTTGGAATTGATGAAACCTCTAAAGAACTTGAGTTATTACTCGAAAGCTTTCCAATAATTGGAATTTGGGGTATGGGTGGGATAGGCAAAACCACCATTGCTAAAGTTATGTTTGCCAAATTCTTTCCCCAGTATGACAGTGTCTGCTTCTTGGCAAATATAAGAGAAGAATCGGAAAGGATTGGACTAACATCTTTACGTCAAGAGCTTTTCAGTAAGCTACTAAAGGAAGAAATTCCTACTTCTGATGTTGTAGGATCCACATCCATTATGAGGAGGCTCAGTAGTAAACAGGTTTTCATTGTACTTGATGATGTAGATAGTTTTGAGCAGTTAGAATCTTTGTGTGGAGAACGAAGTGATCTAGGAGAAAATATTACCCTCATTGTAACAACAAGGGATAGGCAATTGCTTATTGGAAGAGTTGATAAGATATATGAGGTCAACAAAAGGAACGATGAAGAATCTCTAGAGCTTTTTTGCTTGAATGCCTTCAAGAAAAGTCATCCCCAAGAAGGATATAAGGATCTCTCAGATAGGGCAGTCCATTATGCAAAGGGCATTCCATTAGCTTTAAAAGTATTGGGTTCACATCTCCTTTCCAAAAATCATAAATTTTGGGAAAGTACATTGAGAAAACTTGAGAAGTATCCCGATGTGAAAATTTTGAATGTCTTGAAAGTTAGCTATGATGGATTAGATGAACCAGCAAAGCAAATATTTCTAGACATTGCATTCTTTTTCAAAAATAAAGATAAACATATGGCTGTCGGGATACTTGATGCTTGTGATCTTTTCGCAACTAGTGGAATAGATGTCCTAGTAGATAAAGCTCTGATAACTATTTCATATAACAACAGTATACAAATGCATGATTTGCAGCAAGATGTGGCTTCAGATATAGTTCGGAAAGAATGTTTGAGAAACCTTGGAGGACGCAGCCGATTGAGGGATGATGAAGTTTATAATGTACTTGAAAATAACAGGGGGACTGAAAAAGTTGAAGGAATGACGTTAGATTTGTCCCAAGTATTGGTTCTGAAATTGAGTGCTGACACATTCAACAAGATGCCTAATTTGAGATTTCTTCAGTTATATGTCCCTGAGGGCAAGAGACCAAGTACTGTGTACCATTGTACATTTCTTGAGGCATTTTCTGATGAATTGAGGTATTTTGAGTGGGATGGATATCCTTTATCGTCTCTTCCACCAAGTTTTTGTGCTAAGTATCTTGTTGAGATTCGCATGCCACACAGCAATATCAAAGAAATTTGGCAAGGAGTACAGGACCTTGTGAATTTAGAGGCAATTGAACTCCGTGAATGCAAACAGTTGCTAAAGCTTCCAGATTTGTCCAGGGCGTCAAAGCTTAAACGAGTGAATCTCTTTGGCTGTGAAAGCTTGCTTGATGTTCATCCTTCCGTTTTGTCTCTCAGAACACTTGAAACTTTGATTCTGGACAGGTGCAAAAAACTCAAGAGTCTTAAAAGTGAGTGGCATTCACACTCACTAGTGAATATCAGTGTCAATGACTGCATTGTCCTTGAGGAATTCGCAGTGTCCTCCGAATTGATTGAAAGGTTGGATTTAAGCAAGACGCGAGTCAAGAAATTACACTCATCAATTGGTGGTCTGAGCAAGCTTGTGTGGCTTAACCTACAAGGTTTTTGGCTGGAGAATCTTCCAGATGAGCTATCGTGCCTGACATCTCTTCAGGAGCTTAGGATTTCTAGCTGCCGACTACTTGACGAAGAGAAGCTACGTGTCCTGTGTGATGGCTTGCGATCCTTAAAAATACTACATTTGTGTAATTGCCGTAACTTGGTTGAACTCCCCGACAACATCAGCACCTTATCATCATTACATGAATTGAGGCTCGACGGAAGCAATATTAAGAGTTTGCCTAAAAGTATCAGGGATCTTCTAAACCTGGAGATTTTATCCTTAAAACAGTGTGTGTTGCTTGAGGTCATACATGGGATTCCACCATTCATCAAAGAGCTTCACGCTGGCAACTGTAGGTCATTGAGGAAGGTATCCTCTTCAAAGGCTTTTTCAATTATCCCGGTGGAAGCAGGGGAGATATACATTTCGTTTGAGAATGGAGGGGATATGAATGAATGTTCACGCCTCTGGATTATGGAAGAAGCCCTGTTTGATATGAAGATTGCTGCGCTGCAAAATTTATTTGAAAGATGGGGGAAACTTCTCAATAAGTCCCACCAAAATAATAGCAGTGTTAAGATCTGTTTACCAGGAAGGAGAGTCCCGAGGCATTTTTCATATCAAGTCGAACAGTCCTCCATTACGATTAAACTTCCTAACACACGTTCTGACTTGCTAGGCCTCGTTTACTCTGTGGTTCTTACTCCTGCTCTATCAGCTGGAATGATGGAAGGTGCTAAAATCCGTTGTCAATGTCGTTTGGCAAACGGTACATATGTGGGCAAAGCGACTATGTGGCATAGTGTTTCCTTGTATGGATTGGAATCCGATCATGTTTTTGTGTGGTATGATCCATTCCACTGTGACAGAATTCTCCGCTATTATAAACAACTTGATTCAGTTGTTTGCTTCGAGTTCTTTGTTACATATGATACTGAGGAACCTCATAAGAAGATTAGTATCGTAGAGTGTGGGGTCCACCTACTAAGTGTCTCGCAGTTAGAGTTTCGCAAATTCTTGCGAGAATCATGGATAGAGTTGGAGTTGAAGTTGGAGTTGGGGTTGAGGTTTGGATTGGTGTTAGACTTGGCGCGGAGATTTAGTGAAGTGGAGTGGGGGTTATACCAAGCATTGGAGATGGGATGTGAAGTGGACGGATCATTGAGATTAGAGTTAGAATCTCGACGTCGGGCAATTTTAAGGTTAATTGATGGTTTGTAA 3453 0.406 MSSSSSKKHDVFISFRGEDTRTNFTSHLLTALDDNSIRTFIDYKLQKGDDVWPSLSQAIQDSRISIVVFSENYASSTWCLEELVKIMECRKHQSQVVIPVFYEIDPSCVRNQTGSYEVAFTNHEQDLNDNDSDQHKLRRWRVALTQAANISGWDTRSRTLRDDSQAIYNIVKDVSQKLYFLNPDELKGIVGIDETSKELELLLESFPIIGIWGMGGIGKTTIAKVMFAKFFPQYDSVCFLANIREESERIGLTSLRQELFSKLLKEEIPTSDVVGSTSIMRRLSSKQVFIVLDDVDSFEQLESLCGERSDLGENITLIVTTRDRQLLIGRVDKIYEVNKRNDEESLELFCLNAFKKSHPQEGYKDLSDRAVHYAKGIPLALKVLGSHLLSKNHKFWESTLRKLEKYPDVKILNVLKVSYDGLDEPAKQIFLDIAFFFKNKDKHMAVGILDACDLFATSGIDVLVDKALITISYNNSIQMHDLQQDVASDIVRKECLRNLGGRSRLRDDEVYNVLENNRGTEKVEGMTLDLSQVLVLKLSADTFNKMPNLRFLQLYVPEGKRPSTVYHCTFLEAFSDELRYFEWDGYPLSSLPPSFCAKYLVEIRMPHSNIKEIWQGVQDLVNLEAIELRECKQLLKLPDLSRASKLKRVNLFGCESLLDVHPSVLSLRTLETLILDRCKKLKSLKSEWHSHSLVNISVNDCIVLEEFAVSSELIERLDLSKTRVKKLHSSIGGLSKLVWLNLQGFWLENLPDELSCLTSLQELRISSCRLLDEEKLRVLCDGLRSLKILHLCNCRNLVELPDNISTLSSLHELRLDGSNIKSLPKSIRDLLNLEILSLKQCVLLEVIHGIPPFIKELHAGNCRSLRKVSSSKAFSIIPVEAGEIYISFENGGDMNECSRLWIMEEALFDMKIAALQNLFERWGKLLNKSHQNNSSVKICLPGRRVPRHFSYQVEQSSITIKLPNTRSDLLGLVYSVVLTPALSAGMMEGAKIRCQCRLANGTYVGKATMWHSVSLYGLESDHVFVWYDPFHCDRILRYYKQLDSVVCFEFFVTYDTEEPHKKISIVECGVHLLSVSQLEFRKFLRESWIELELKLELGLRFGLVLDLARRFSEVEWGLYQALEMGCEVDGSLRLELESRRRAILRLIDGL* 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1526 1150 ProSiteProfiles TIR domain profile. 7 178 IPR000157 GO:0007165
Lja3g1526 1150 Pfam C-JID domain 940 1074 IPR045344 -
Lja3g1526 1150 Gene3D - 341 423 IPR042197 -
Lja3g1526 1150 SUPERFAMILY "Winged helix" DNA-binding domain 410 495 IPR036390 -
Lja3g1526 1150 Pfam TIR domain 8 178 IPR000157 GO:0007165
Lja3g1526 1150 SUPERFAMILY L domain-like 528 867 - -
Lja3g1526 1150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 433 IPR027417 -
Lja3g1526 1150 Pfam Leucine Rich Repeat 599 618 IPR011713 -
Lja3g1526 1150 PANTHER NB-ARC DOMAIN PROTEIN 7 953 - -
Lja3g1526 1150 Gene3D - 180 332 IPR027417 -
Lja3g1526 1150 Gene3D Ribonuclease Inhibitor 526 693 IPR032675 -
Lja3g1526 1150 Gene3D Ribonuclease Inhibitor 694 879 IPR032675 -
Lja3g1526 1150 Gene3D - 5 179 IPR035897 -
Lja3g1526 1150 SMART till_3 8 150 IPR000157 GO:0007165
Lja3g1526 1150 PRINTS Disease resistance protein signature 374 388 - -
Lja3g1526 1150 PRINTS Disease resistance protein signature 282 296 - -
Lja3g1526 1150 PRINTS Disease resistance protein signature 208 223 - -
Lja3g1526 1150 PRINTS Disease resistance protein signature 781 797 - -
Lja3g1526 1150 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 153 IPR035897 -
Lja3g1526 1150 Pfam NB-ARC domain 207 406 IPR002182 GO:0043531
Lja3g1526 1150 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 953 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1526 Lja-Chr3 16519169 16523711 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1526 4 813 WRKY Transcription Factor Family AT4G12020 31.775 8.92e-88 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1526 - - lja:Lj3g3v2666470.1 1092.03