Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1524 ATGGGAGGTATAGGTAAGACAACCATTGCTAAAGCCATGTTTGCCAAACACTTCCCTCAATATGACAGTGTGTGCTTCTTGGAAAACGTAAGAGAAGAGTCACAGAAGCACGGGCTAGCATATATCCGAGATAAGCTTCTCTTTGAGCTACTGAAGGAACAAGTTACAGCATCCAATATTTCTGGATCCACATTCGTGAAGAGAAGGCTCAGTAGCAGGAAAGTTTTCATTGTGATTGATGATGTGGACAGTTTTGAGCAATTAGAATATTTGTGTGAAGAATTCAGTGACTTGGGACAAGGTAGCAGTCTCATTGTAACAACAAGAGATAAACATTTGCTTCATGGAAGAGTTGACAAGATATATGAGGTCAAGCAATGGAACTTTCAAGAATCGCTCGTTCTCTTCAGCTTAGCAGCCTTCAAGAAAAGGGAGCCTGAAAATGGTTATGAGGATCTCTCACGAAAGGCAATTGAATATACTGGAGGCGTTCCATTAGCTTTGAAAGTCTTGGGTTCACATTTTCATTCCAGAGAAACTCAGTTCTGGGTATCTGAATTGAAGTACTTGGAGAGCAAGAAGGAACCCTTTAGGAAAATTCAAGAAGTGTTGCAAGTGAGCTATAATGGATTAGAAAGGAGGGATCAACAGTCAATATTTCTGGACATTGCTTTCTTTTTCAAAGATGAAAATAAAGATTCCGTAATAAAGATACTAGATGCCTGTGGTTTTAACGCTACTAGTGGAATAGAAATACTTAAAGATAAAGCTCTTATAAGTATTTCAAACAGCAATATTATAGAAATGCATGATTTGCTACAAGAAATGGGGTTCGATATAGTTCGAAAAGATGTAACAGACCCTGGAAGACGCAGCCGATTGAGGGATATTGAGGAAGTTAATAATGTACTTCAAAATGACAAGGTAGCTCCTGAAGTTGAAGGAATAACGTTAGATTTGTCTCAGGCAATAGATTTGCAATTGAGTGATGACATATTCAACAGGATGCCTAATTTAAGATATCTTAGATTATATGTTCCTGTGGGTAAGCAAAGATCAGCTGAAGTGCACTACTATCCCGGACTCCTCGATAAGCGAGGCTCGGCTGGATTGAAGTATCTTGAGTGGAGTGGATACCCTTCAAAGTCACTTCCACCAAATTTTTGTGCTAAGTTTCTAGTTGAGATTCGCATGCCGCACAGCCATGTTAAAGAACTTTGGCAGGGGACGCAGGATCTTGTGAATTTAGAGACAGTTGACCTGAGTGAATGCAAACAGTTGGTGAGGCTTCCTGATTTCTCTAAAGCATCCAAACTCAAATGGGTTTATCTCTCCAGATGTGAAAGTCTGTGTGTTGTTCATCCATCTCTTCTAAATGTGGACACACTAGTTACTTTGATACTGGATAGGTGCAAAAAACTGAATAGTCTGAAAAGTGAAAAGCATTTAAGCGATCTGCAGAACCTCAATGTCAATGACTGTTTCAGCCTCAAGGAATTTTCATTGTCGTCCGATTCAATTAAAGGGTTGGATTTAAGCAAGACAGGTGTAAAAAAATTGTACCCATCAATCGGTCAAGGTTTGAGCCTACAGAATCTTCCCGATGAGTTATCATGCCTGACATCTCTTCAGGAGCTAAGGATTTCTAACTGCGGAGCAGTTAACAAAGAAAAGCTACATGTCCTGTGTGCTGGCTTACGATCCTTAAAACTGCTACATCTGAAGGATTGTTATAAGTTGTTTGAACTCCCCGACAACCTCAGTGCCTTGTCATCACTGCATGAATTGAGGCTCGATGGAAGCAGTGTGAAGAAGTTGCCGACAAGCATCAAGCTTCTAAAATATCTGGAGATTCTCTCCTTAGTGAATTGTAGGAAGCTTCAGTTTCTACCTGAGCTTCCACTGTCCATCAAAGAGCTTTGTGTCGTCAACTGTACCTCATTAGTGACCGTATCTACTTTAAAAACCTTTGCAGTTCAGATGAAAGGAAAGGAGAAAGACATATCGTTTATGAATGGAGTGAAGCTGAATGAATGTTCACTCCTCCGGATTATGGAAGACACACTGTTTACAATGAAGAGTGCTGCATTGCACCATGTATTTGTAAGAAGGTTTGGTGTGGAAGCTCACAGCTACAATTATAACAGTGTTAGGGTTTGTTTACCAGGAAGCAGGATACCAGGGCAAAGTTTGTTGGACTATCGAACCTCAGGGTCCTCAATTTGCGCGAAAAACCCTGGACCTTCATCCCACTGGCTAGGTACCATTTATTCTGTGGTTCTTTCTCCATCCCCTGGAATCAACTGGCATCGTGTTAAAATCCAATGCCAAGTTGACGGGAGAGTTGGTGTTTGGGGACTGAGGGAATGCAAGCCTTCATGGTATGGCAAAGACATTGAGGAATTCAATTCGGATCATGTTTTTGTATGGGAAGGTTCAAGTTGGAAAGTTTTCACTTACAATTATGAAAGCGTTCTATTTGACTTCCTTGTTACAACTGATAGCCAGCAAGATAATGACCTGATCAAAATAAAAGAGTGTGGGGTTCACCTAATATGTTTCTCGGATTCTGAGCTTCGCAAATTCTTAGGGGAAGCACCAGACTTGGAACCACAGTTAAATGGACGTGAATTGGATGAATCATTGAAATTAGAGTTAGAATCACGTCGTCAAGCAGTTTCAACGTTAATTGAGAAGGAAGAATGCAATGCCAAAAGAACCCAGATACAGCACCAACAAGAGGACTTGAGGGAAAAATGTTCATATTCCAGTAACTGCATTTCTGATCTCTTACGGTACTTGTGGAGTTTGATCAGCACCTAG 2823 0.4063 MGGIGKTTIAKAMFAKHFPQYDSVCFLENVREESQKHGLAYIRDKLLFELLKEQVTASNISGSTFVKRRLSSRKVFIVIDDVDSFEQLEYLCEEFSDLGQGSSLIVTTRDKHLLHGRVDKIYEVKQWNFQESLVLFSLAAFKKREPENGYEDLSRKAIEYTGGVPLALKVLGSHFHSRETQFWVSELKYLESKKEPFRKIQEVLQVSYNGLERRDQQSIFLDIAFFFKDENKDSVIKILDACGFNATSGIEILKDKALISISNSNIIEMHDLLQEMGFDIVRKDVTDPGRRSRLRDIEEVNNVLQNDKVAPEVEGITLDLSQAIDLQLSDDIFNRMPNLRYLRLYVPVGKQRSAEVHYYPGLLDKRGSAGLKYLEWSGYPSKSLPPNFCAKFLVEIRMPHSHVKELWQGTQDLVNLETVDLSECKQLVRLPDFSKASKLKWVYLSRCESLCVVHPSLLNVDTLVTLILDRCKKLNSLKSEKHLSDLQNLNVNDCFSLKEFSLSSDSIKGLDLSKTGVKKLYPSIGQGLSLQNLPDELSCLTSLQELRISNCGAVNKEKLHVLCAGLRSLKLLHLKDCYKLFELPDNLSALSSLHELRLDGSSVKKLPTSIKLLKYLEILSLVNCRKLQFLPELPLSIKELCVVNCTSLVTVSTLKTFAVQMKGKEKDISFMNGVKLNECSLLRIMEDTLFTMKSAALHHVFVRRFGVEAHSYNYNSVRVCLPGSRIPGQSLLDYRTSGSSICAKNPGPSSHWLGTIYSVVLSPSPGINWHRVKIQCQVDGRVGVWGLRECKPSWYGKDIEEFNSDHVFVWEGSSWKVFTYNYESVLFDFLVTTDSQQDNDLIKIKECGVHLICFSDSELRKFLGEAPDLEPQLNGRELDESLKLELESRRQAVSTLIEKEECNAKRTQIQHQQEDLREKCSYSSNCISDLLRYLWSLIST* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1524 940 Pfam Leucine Rich Repeat 392 411 IPR011713 -
Lja3g1524 940 Gene3D - 128 212 IPR042197 -
Lja3g1524 940 SUPERFAMILY L domain-like 318 646 - -
Lja3g1524 940 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 712 IPR044974 GO:0006952
Lja3g1524 940 Pfam NB-ARC domain 1 196 IPR002182 GO:0043531
Lja3g1524 940 SUPERFAMILY "Winged helix" DNA-binding domain 199 300 IPR036390 -
Lja3g1524 940 Gene3D Ribonuclease Inhibitor 297 479 IPR032675 -
Lja3g1524 940 Gene3D Ribonuclease Inhibitor 480 662 IPR032675 -
Lja3g1524 940 PANTHER NB-ARC DOMAIN PROTEIN 1 712 - -
Lja3g1524 940 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 223 IPR027417 -
Lja3g1524 940 Coils Coil 899 919 - -
Lja3g1524 940 Gene3D - 1 121 IPR027417 -
Lja3g1524 940 PRINTS Disease resistance protein signature 69 83 - -
Lja3g1524 940 PRINTS Disease resistance protein signature 411 427 - -
Lja3g1524 940 PRINTS Disease resistance protein signature 161 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1524 Lja-Chr3 16512633 16516529 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1524 1 852 WRKY Transcription Factor Family AT5G45050 29.057 1.41e-77 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1524 - - lja:Lj3g3v2666470.1 1277.31