Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1522 ATGTCTTCTTCTCGTTTGTCTCCCAAAAAGTACGATGTTTTTATTAGCTTTAGAGGTGAGGACACCCGAGAAAACTTCACTAGCCATCTTCATTCTGCTCTCAGAGACAAGAACATCGTTGCCTACATAGATGATCAGCTCAAAAGAGGAGATGATGTTGGGCCAGCACTTGAAAAAGCAATCAAGGACTCGCTGGTGTCCGTTGTTGTGTTCTCAGAAAGGTACGCAACATCAAAGTGGTGTTTGCAAGAACTGGTTGTTCTTCCAGTTTTCTACAAAACAAATCCAACAGACGTACGGAAGCAGACAGGGAGTTATCAGAAACCATTTGAAGACTATGATCGACTCGCCGCCGCCAGTAGCAAAAGAGACGACGACCAGAACAAAGTTGGTACTTGGAGAGCTGCTCTCTATGATGCAGCCAATATATCTGGATGGGACTCAAGTAACCACAAGGATGATTCTCAAGTTATATGGAACATTGTAAACGATGTTTCACAAAAGCTGCACCTAAGGTACCCTAATAAAGTAGAAGGCCTTGTTGGAATTGAGGAACACTGTACAGAGATTGGATATGTGCTGGGAAAAGTTGGAAGAATTGGAATTTGGGGGATGGGGGGAATAGGTAAGTCAACCATTGCTAAAGCCATATTTGTCAAATACTTCCCCCAATATGACAGTGTATGCTTCTTGGAAAATGTCAGAGAAGAATCACATAAGCACGGACTAACATACATCCGTGATAAGCTTCTTTCTGAGCTGCTAAAGGAACAAGTTACAACATCCAATATTTCTGGATCCGCATTCATTAAGATGAGGCTCAGTAGTAGAAAAGTTTTCATTGTGGTTGACGATGTGGATAGTTTTGAGCAATTAGAATACTTGTATGGAGAATTCAGGGACTTGGGACAAGGTAGCAATCTCATTGTAACAACAAGAGATAAACACTTGCTTAATGGAAGAGTTGACAAGATATATGAGGTCAAGCAATGGAACTTTCAAGAATCACTTGTGCTCTTCAGCTTAGCAGCCTTCCAGAAAAGTAATCCTAAAAAGGGTTATGAGGGTCTCTCACAAAGGGCAGTTAAATATGCAGGAGGTGTTCCATTAGCTTTAAAAGTTTTGGGTTCACATTTTCATTCCAGAAATGATCCTGAATTCTGGAAATCTGAACTGAATTACTTGGAGAGCAAGAAGGAACCCCTAAAGAAAATTCAAGAAGTGTTACAAGTGAGCTATAAAGGATTAGAAAGGACTGAGCAGCAGGAAATATTTCTGGACATAGCTTTCTTTTTCAAAGATGAAAATAAAGATTCTGTCATAAGGATACTAAATGCTTGTGGCTTTAATGCTATTAGTGGAATACAAATACTTCAAGATAAAGCTCTTATAAGTGTTTCAAGTATCAATACTATACAAATGCATGACTTGCTACGAGACATGGCTTTCGATATAGTTCGAAAAGGCATAACAGACCCTGGAAGACGTAGCCGATTGAGGGATATTGAAGAAGTTCATAATGTACTTCAGAATGACAAGGAAACTCGTGAAGTTGAAGGAGTAGCGTTAGATTTGTCTGAGGCAGTAGGTTTGCAATTGAGTGATGACATATTCAACAGGATGCCTAATTTAAGACTTCTTAGATTATATGTCCCCGCGGGTAAGCAAAGACCAGCTAAAGTGCACTATTATTCTAGCCTCCTCCATATGCGAGATTCTGCTAGATTGAAGTACCTTGAGTGGAGTGGATACCCTTCAAAGTCTCTTCCACCCAACTTTTGTGCCATGTTTCTTGTTGAGATTCGCATGCCGCAAAGCCATGTTGAAGAACTTTGGCAAGGGACTCAGGATCTTGCGAATTTAGAGACAATTGACCTGATTGAATGCAAACAGTTGGTGAAGCTTCCTGATTTGTCTAAAGCCTCAAAAATCAAATGGGTTTATCTGTCCAAATGTGAAAGTTTGTGTGTTATTCATCTTCTATCTGTGGAGACACTAGTTACTTTGATGCTGGATGGATGCAAAAAACTGAAGATTCTTATAAGTGAAAAGCATTTAAGCAATCTGCAGGAGTTCAATGTCGATGGCTGTTCAAGCCTCGAGGAATTTTCAGTGTCGTTTGATTCAATTAAGAGGTTTGATTTAAGCAAGATAGGGGTCAAAAAATTGTACTCGTCAATCGGTCGTCTAAGCAAGCTTGAGTGGCTCAATCTAGAAGGTTCGAGGCTGCAGAATCTTCCTGATGAATTATCATATCTGACGTCTCTTAAGGGGCTAACTCTTTCTAACTGTGGAGTAGTTTACAAAGAGAAGCTACATGATTGTTATAACTTGTTTGAACTCCCCGACAACATCAGTGCCTTGTCATCACTGTATTTGTTGAAGCTCGATGGAAGCAGTGTGAAGAAGTTGCCTACAAGTATCAAGCTTCTTGAAAATCTGGAGATTCTCTCCTTAAAGAATTGTAGGAAGCTTCAGTTTCTACCTGAGCTTCCATTGTCTATCAAAGAGCTTTGTACCTTTGCAGTCAAGATGGAAGGAAAGGAGAAAGACATATCGTTTATGAATGCAATGAAACTGAATGAATGTTCGCTCCTCCAGATTATGGAAGACGCCCTGTTTACAATGGAGAGTGCTGATTTGAACAATCTATTTGTAAGAAGGTTTGGTTTGGATGTCCACAGTTACAATTATAACAGTGTAAGGCTTTGTTTACCAGGAAGCAGTGTCCCCTCAGGTTCAGGGCAAAGGTTGTTGACATATCGAACCACAGGGTCCTCAATTAATATTGAACTCCATAGACCTTTTTCCCAGTGGTTAGGCATCATATACTCTGCGGTTCTTTCTCCACCCCCTGGAATCAAGCAGCATTGTGCAAAAATTATCTGTCGGAGCAAGTTTTCAACAGAAACACAACACGGTAAAATTCAAGAATATGGTGGTACATCTTATGATAAACACATCCCGGATTTTAATTCGGATCATGTTTTTGTGTGGCAAAGTAAAACTGATGTACAGAGGTTGCTGACTAGTAACAGGGTTAACAGATTCAATTTTGAGTTCTCGGATGATAATAATATGATCAAAATAAAAGAGTGCGGGGTTCACCTAATATATTACTCGGATTTTGAGCTTCGCAGATTCTTAGGGGAAGCACCAGACTTGGAACCACATTTAAAGTTGGAGTTGGGATTGAAGTTGCAAATGGCACTGGACTTGCTGGAGTATAATAATAAGAAAGTGGAAAATTTATACTTTGCATTGGAAAATGGACGTGAATTGGATGAACCATTGAAATTAGAGTTAGAGTCACGTCGTCAAGCAGTTTCAACGTTAATTGAGAAGGAAGAAGGCAATGCCAACAGAACCCAGATACAGCACCAACAAGAGGACTTGAGGGAAAAATGTTCATGTTTCAGTGGCTGCATTGTCGGTATGAAACTCACTACTCTCCTTACTATTCTCCTATATATTATCCGTCTTCTGCTGTTGCATTGTTCCTTCATCTTTTACTAG 3516 0.399 MSSSRLSPKKYDVFISFRGEDTRENFTSHLHSALRDKNIVAYIDDQLKRGDDVGPALEKAIKDSLVSVVVFSERYATSKWCLQELVVLPVFYKTNPTDVRKQTGSYQKPFEDYDRLAAASSKRDDDQNKVGTWRAALYDAANISGWDSSNHKDDSQVIWNIVNDVSQKLHLRYPNKVEGLVGIEEHCTEIGYVLGKVGRIGIWGMGGIGKSTIAKAIFVKYFPQYDSVCFLENVREESHKHGLTYIRDKLLSELLKEQVTTSNISGSAFIKMRLSSRKVFIVVDDVDSFEQLEYLYGEFRDLGQGSNLIVTTRDKHLLNGRVDKIYEVKQWNFQESLVLFSLAAFQKSNPKKGYEGLSQRAVKYAGGVPLALKVLGSHFHSRNDPEFWKSELNYLESKKEPLKKIQEVLQVSYKGLERTEQQEIFLDIAFFFKDENKDSVIRILNACGFNAISGIQILQDKALISVSSINTIQMHDLLRDMAFDIVRKGITDPGRRSRLRDIEEVHNVLQNDKETREVEGVALDLSEAVGLQLSDDIFNRMPNLRLLRLYVPAGKQRPAKVHYYSSLLHMRDSARLKYLEWSGYPSKSLPPNFCAMFLVEIRMPQSHVEELWQGTQDLANLETIDLIECKQLVKLPDLSKASKIKWVYLSKCESLCVIHLLSVETLVTLMLDGCKKLKILISEKHLSNLQEFNVDGCSSLEEFSVSFDSIKRFDLSKIGVKKLYSSIGRLSKLEWLNLEGSRLQNLPDELSYLTSLKGLTLSNCGVVYKEKLHDCYNLFELPDNISALSSLYLLKLDGSSVKKLPTSIKLLENLEILSLKNCRKLQFLPELPLSIKELCTFAVKMEGKEKDISFMNAMKLNECSLLQIMEDALFTMESADLNNLFVRRFGLDVHSYNYNSVRLCLPGSSVPSGSGQRLLTYRTTGSSINIELHRPFSQWLGIIYSAVLSPPPGIKQHCAKIICRSKFSTETQHGKIQEYGGTSYDKHIPDFNSDHVFVWQSKTDVQRLLTSNRVNRFNFEFSDDNNMIKIKECGVHLIYYSDFELRRFLGEAPDLEPHLKLELGLKLQMALDLLEYNNKKVENLYFALENGRELDEPLKLELESRRQAVSTLIEKEEGNANRTQIQHQQEDLREKCSCFSGCIVGMKLTTLLTILLYIIRLLLLHCSFIFY* 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1522 1171 SMART till_3 10 143 IPR000157 GO:0007165
Lja3g1522 1171 ProSiteProfiles TIR domain profile. 9 169 IPR000157 GO:0007165
Lja3g1522 1171 Pfam Leucine Rich Repeat 597 616 IPR011713 -
Lja3g1522 1171 Gene3D - 8 169 IPR035897 -
Lja3g1522 1171 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 146 IPR035897 -
Lja3g1522 1171 Gene3D - 332 417 IPR042197 -
Lja3g1522 1171 Gene3D Ribonuclease Inhibitor 499 681 IPR032675 -
Lja3g1522 1171 Gene3D Ribonuclease Inhibitor 682 860 IPR032675 -
Lja3g1522 1171 Gene3D - 170 325 IPR027417 -
Lja3g1522 1171 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 427 IPR027417 -
Lja3g1522 1171 SUPERFAMILY L domain-like 523 832 - -
Lja3g1522 1171 Pfam TIR domain 10 178 IPR000157 GO:0007165
Lja3g1522 1171 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 922 IPR044974 GO:0006952
Lja3g1522 1171 PANTHER NB-ARC DOMAIN PROTEIN 9 922 - -
Lja3g1522 1171 Pfam NB-ARC domain 200 414 IPR002182 GO:0043531
Lja3g1522 1171 SUPERFAMILY "Winged helix" DNA-binding domain 403 489 IPR036390 -
Lja3g1522 1171 PRINTS Disease resistance protein signature 365 379 - -
Lja3g1522 1171 PRINTS Disease resistance protein signature 199 214 - -
Lja3g1522 1171 PRINTS Disease resistance protein signature 616 632 - -
Lja3g1522 1171 PRINTS Disease resistance protein signature 273 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1522 Lja-Chr3 16495109 16500020 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1522 7 824 WRKY Transcription Factor Family AT4G12020 29.988 6.07e-88 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1522 - - lja:Lj3g3v2666470.1 1810.42