Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1521 ATGTCGTCGTCTTCTTCTTCTTCTCGTGTGTTTCCTAAGAAGTATGATGTTTTCATTAGCTTCAGAAATGAGGACACCGTAGGCGACTTCATTAGTTATCTTCGTGCTGCTCTGAGAGACAAGAATATCATAACCTATACAGATGATCGACGACAAAAAAGAGGAGATGATGTTGGATCTGAACTTAAGAAAGCGATCAAGGACTCGGTGATGGCTGTTGTGGTGTTCTCAAAAAGATACGCAACTTCAACATGGTGTTTGCAAGAAATGGTCCAAATGATGGAGTGCAGAAGAGATGAGGGGCAGGTTGTTATACCAGTGTTCTACAAAGCATATCAAACAGACGTAAGGCACCAGACAGGGAGTTACAAGGAACCGTTTGAAGAACATTATCGAGCTGCCATGGAAGATAAAAAGGAGCAAGACAAAGTGGATAGTTGGAGAGATGCTCTCACTCAAGCAGCCAACATATCTGGATGGCACTACTTTAACCACGAGGACAAATCTCGAGTCCTACAGAATGTTGTTAATGATGTTTTGCAAAAGCTGCAGCTGAGGCACCCTAAAAATCTAGAAGGCCTAGTTGGAATTGAGGAACAATGTAGAGCTATTGAACGTTTTTTGGGAAAAGTTGGAAAAATTGGAGTTTGGGGCATGGCTGAAACAGGTAAGACAACCGTTGCTAAAGCCTTATTTGCCAGACACTTCCCTCAATATGACAGTGTATGCTTCTTGCAAAATGTAAGAGAAGAATCAGAAAAGCACGGACTACCACACGTCCGTAAAAATCTTCTCTCTGAGCTGCTAAAGGAACAAGTTACAACCTCCAACTTTTTATTTGGATCCATTGAGTGGAGGCTCAGTAGTAAAAAAATTCTCATTGTGCTTGATGATGTACATGAGTATGAGCAGTTAAAATATTTGTGTGAAGAACTTGGTGACTTGGGAGAAGGTAGTGCTCTCATTGTAACCACAAGAGAAAAACAAGTGCTTAATGGAAGAGTTGATAAGATATATGAGGCAAAAAAATGGACTATGTCGTTGTGTGTTGCTCCTAAGAAATACGATGTTTTCATTAGCTTCAGAGGTGAGGACACTAGAGACAACTTCACTAGCTATCTCCGTACGGCTCTGAGAGACAAAAATATCATAACCTATACAGATGATCGACTAAAGAAAGGAGATAATGTTGGATCAGAACTAGAGAAAGCAATCAAGGACTCCATGATGGCGGTTGTAGTGTTCTCAGAAAGATACGCAACTTCAAAATGGTGTTTGCAAGAAGTGGTCCAAATAATGGACTGCAGAAGAGATGAGGGACAGGTTGTTATACCAGTGTTCTACAAAACAAATCCTACAGACGTACGACATCAGACAGGGAGTTACCAGAAACCATTTGAAGAATATTATCGAGCAGCCAGGAAAGATAAAAAGGAGCAAGACAAAGTGGATAGTTGGAAAGATGCTCTCACTCAAGCAGCCAACATATCTGGATGGGACTCAAGTAATCACAAGGACGATTCTCAAGTCCTACGGAACGTTGTTAACGATGTTTTGCAAAAGCTGCGGCTGAGGTATCCTAAAAATCTAGAAGGCCTAGTTGGAATTGACGAACAATGTAAAGCTATTGAATGTTTTTTGGGAAAACATGGAAGAATTGGAGTTTGGGGCATGGGGGGAACAGGTAAGACAACCATAGCTAAAGCCTTATTTGCCAAACACTTCCCTCAATATGATAGTGTATGCTTCTTGCAAAATGTAAGAGAAGAAACAGAAAAGCACGGACTACCACACGTCCGTAAAAATCTTCTATCTGAGCTGCTAAAGGAACAAGTTACAACCTCATACATTTTTGGATCCATTGAGTGGAGGCTCAAAAGTAAAAAAGTTCTCATCGTGCTTGATGATGTACATGAGTCTGAGCAATTAAAATTTCTGTGTGAAGAACTTGGTGACTTGGGAGAAGGTAGTGCTGTCATTGTAACCACAAGAGAAAAACAAGTGCTTAATGGAAGAGTTGATGAGATATATGAGGCCAAGACATGGGGCTTTGAAAAATCTCTTGAGTTCTTTTGCTTAGAAGCTTTCAAGAAAAGGGAGCCAGAAAAGGGTTATGAGGATCTGTCACAAAGGGCAGTTACATATGCAGGAGGCGTTGCGTTGGCTTTAGAAGTTTTGGGTGCACACTTTCGTTCCAAAGGAACTAAATTCTGGGAATCTGAATTGAGTCACTTGGAGAGCAGAAAAGAACCCTTAAAGAAAGTTCAACAGCTTTTACTAGTGAGCTATCATGCATTGTCAGGGCGAGAGCAGGCAATACTCCTAGACATTGCTTCCTTTCTCAAAGACGAAAATAGAGATTCTGTCATAAGTATACTAGATGCATGTGGTTTCAATGCTACTAGTGGAATGGAAATACTTAAAGATAAAGCTCTTATAAGTACATCAAAGACCAATACTATACACATGCACGACTTGCTACAAGACATGGCTTTGGATATAGTTCGAAATGATGTAAGAGGCAGCCGATTGAGGGATATTGAACAAGTTTGTGATGTGCTTCAATATGATGACAAGGGAATTCGTCATGTTGAAGGAATAGCATTGGATTTGTCTCAGGAAGTAGATTTGCAACTGAGTGATGACATATTCAACAGGATGCCTAAATTGAGAATTTTTAGATTATATGTCCCAGCTGGTAAGCAGAGAATAGCTAATGTTATTTACAATCCCAGACTCCTCCATAACCACAGGCCAGGTTCTGCTGTAAGGTACTTTGAGTGGAACGGATACCCTTCCAAGTCTCTTCCACCAAATTTTTCTGCTAAGCTTCTTGTTGCGATTCGCATGCCACAGAGTGATGTTGAAGAACTTTGGGAGGGGACGCAGGAGCTTAAGAATTTAGAGATAATTGACCTAAGTGAATGCAAGCAGTTGGTGAAGCTCCCTGATTTGTCTAAAGCATCCAAACTCCAATGGAGTCTTTTAAGTGAAAAGCATTTAAACCACCTGGAGGACCTCAATGTGAATGATTGTTCAAGTCTCGAGGAATTTGCAGTGTCCTCTGATTCAATTGAAAGGTTGGATCTAAGCAAGATTGGAGTTAAAAAATTGTACTCATCAATAGGTCGTCTAAGCAAGCTTGTGTGGCTCAATATAGATGGTTCAAGGCTGGAGAGTCTTCCTGATGAGTTATCACACCTGCCATCTCTAAAGGAGCTAAGGATTTCTAACTGCGTACTAATTGACAAAGAGAAGCTACATGTCCTGTGTGCTGGCTTAGGAACCTTAAAATTACTACATCTGAAGGAATGTTATGAGTTGTTTGAACTCCCAGACAACATCAGTGCCTTGTCATCATTGCGAGAATTACGGCTCGATGGAAGCAGTGTGGAGAAGTTGCCTACAAGTATCAAGCTTCTTGAAAAGCTTGAGATTCTCTCGTTGGATAATTGTAGGACACTCAAGTTTATACCTGAGCTTCCATTGTTTATTGTAGAGCTTCACGCTGTCAACTGTACCGCATTGGTGACGGTATCCACTTTAAAGACTCTTTCAGTGAAGATGATAGGAAAGGAGAAACACATATCATTTATGAATGCAATGAAGCTGAATGAATGTTCCCTCCGGGTTATTGAGGATATTTTGTTCACAATGAAGAGTGCTGAGATGCAAAATATATATGTAAACAAGTTCAGATTGGATGTCAACAGTTACAATCCAAATAGTGTTGCGGTTTGCTTACCAGGAAGCAATGTTCCCTCAGGCTCAGGCTTGGGGCAAGGGTCTTTCGCATATCGAAGCACAGGGTCCTCAATTATCATTGAGCCTCATGACAGAAGTTTGTCCCGCTGGCTAGGCACCATTTATTCTGTGGTTCTTTCTCCATCACTTGGATTGACATTAAGTGGTGCTAAAATCCAATGCCGAATATACGGGAAAGACAAAGATGAGGAATGCAAGACCACATGGTATGGCAAAGACATCGGGGAATTCGATTCGGATCATGTTTTTGTATGGCATGGTTCAAGTGTCGATGATGCACAAGTTTTTGAGTTCTTTGTTACAATAGATGGAGGGGTAAACATTATTGACCAGATCAAACTAAAAGAGTGTGGGATTCACCTGATGTGTTACTCAAATTCTGAGCTTCAGAGTTTCTTAGGTGAAGCACCGGAATTGGAACCGGAGATCAAGTCGGAGTTGAGTAAGAAGTTGCAAATGTCGTTGAACTTGCAGCAGGATGATAATAAGAAAGCGGTTAACGAATTGCCTTCAATGGTGGATCCATCTGCTAGCTATAGCAGCAGTTTGGAGGAAGCTGAATTATGGAATAGTGAGGAAGCGGCAGCTGCTTCATGGCGTGAATGGCAGGATGATCCATATCTGAGTAATTGGAGGGATTGA 4407 0.4109 MSSSSSSSRVFPKKYDVFISFRNEDTVGDFISYLRAALRDKNIITYTDDRRQKRGDDVGSELKKAIKDSVMAVVVFSKRYATSTWCLQEMVQMMECRRDEGQVVIPVFYKAYQTDVRHQTGSYKEPFEEHYRAAMEDKKEQDKVDSWRDALTQAANISGWHYFNHEDKSRVLQNVVNDVLQKLQLRHPKNLEGLVGIEEQCRAIERFLGKVGKIGVWGMAETGKTTVAKALFARHFPQYDSVCFLQNVREESEKHGLPHVRKNLLSELLKEQVTTSNFLFGSIEWRLSSKKILIVLDDVHEYEQLKYLCEELGDLGEGSALIVTTREKQVLNGRVDKIYEAKKWTMSLCVAPKKYDVFISFRGEDTRDNFTSYLRTALRDKNIITYTDDRLKKGDNVGSELEKAIKDSMMAVVVFSERYATSKWCLQEVVQIMDCRRDEGQVVIPVFYKTNPTDVRHQTGSYQKPFEEYYRAARKDKKEQDKVDSWKDALTQAANISGWDSSNHKDDSQVLRNVVNDVLQKLRLRYPKNLEGLVGIDEQCKAIECFLGKHGRIGVWGMGGTGKTTIAKALFAKHFPQYDSVCFLQNVREETEKHGLPHVRKNLLSELLKEQVTTSYIFGSIEWRLKSKKVLIVLDDVHESEQLKFLCEELGDLGEGSAVIVTTREKQVLNGRVDEIYEAKTWGFEKSLEFFCLEAFKKREPEKGYEDLSQRAVTYAGGVALALEVLGAHFRSKGTKFWESELSHLESRKEPLKKVQQLLLVSYHALSGREQAILLDIASFLKDENRDSVISILDACGFNATSGMEILKDKALISTSKTNTIHMHDLLQDMALDIVRNDVRGSRLRDIEQVCDVLQYDDKGIRHVEGIALDLSQEVDLQLSDDIFNRMPKLRIFRLYVPAGKQRIANVIYNPRLLHNHRPGSAVRYFEWNGYPSKSLPPNFSAKLLVAIRMPQSDVEELWEGTQELKNLEIIDLSECKQLVKLPDLSKASKLQWSLLSEKHLNHLEDLNVNDCSSLEEFAVSSDSIERLDLSKIGVKKLYSSIGRLSKLVWLNIDGSRLESLPDELSHLPSLKELRISNCVLIDKEKLHVLCAGLGTLKLLHLKECYELFELPDNISALSSLRELRLDGSSVEKLPTSIKLLEKLEILSLDNCRTLKFIPELPLFIVELHAVNCTALVTVSTLKTLSVKMIGKEKHISFMNAMKLNECSLRVIEDILFTMKSAEMQNIYVNKFRLDVNSYNPNSVAVCLPGSNVPSGSGLGQGSFAYRSTGSSIIIEPHDRSLSRWLGTIYSVVLSPSLGLTLSGAKIQCRIYGKDKDEECKTTWYGKDIGEFDSDHVFVWHGSSVDDAQVFEFFVTIDGGVNIIDQIKLKECGIHLMCYSNSELQSFLGEAPELEPEIKSELSKKLQMSLNLQQDDNKKAVNELPSMVDPSASYSSSLEEAELWNSEEAAAASWREWQDDPYLSNWRD* 1469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1521 1468 Pfam NB-ARC domain 553 754 IPR002182 GO:0043531
Lja3g1521 1468 Pfam NB-ARC domain 213 336 IPR002182 GO:0043531
Lja3g1521 1468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 777 IPR027417 -
Lja3g1521 1468 PANTHER NB-ARC DOMAIN PROTEIN 353 1278 - -
Lja3g1521 1468 PANTHER NB-ARC DOMAIN PROTEIN 13 346 - -
Lja3g1521 1468 ProSiteProfiles TIR domain profile. 353 518 IPR000157 GO:0007165
Lja3g1521 1468 Gene3D - 524 675 IPR027417 -
Lja3g1521 1468 Gene3D - 684 767 IPR042197 -
Lja3g1521 1468 ProSiteProfiles TIR domain profile. 13 183 IPR000157 GO:0007165
Lja3g1521 1468 PRINTS Disease resistance protein signature 963 979 - -
Lja3g1521 1468 PRINTS Disease resistance protein signature 716 730 - -
Lja3g1521 1468 PRINTS Disease resistance protein signature 624 638 - -
Lja3g1521 1468 PRINTS Disease resistance protein signature 552 567 - -
Lja3g1521 1468 SUPERFAMILY "Winged helix" DNA-binding domain 753 854 IPR036390 -
Lja3g1521 1468 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 160 IPR035897 -
Lja3g1521 1468 Pfam TIR domain 14 195 IPR000157 GO:0007165
Lja3g1521 1468 Pfam TIR domain 354 534 IPR000157 GO:0007165
Lja3g1521 1468 Gene3D - 181 338 IPR027417 -
Lja3g1521 1468 Gene3D - 11 180 IPR035897 -
Lja3g1521 1468 SUPERFAMILY L domain-like 869 1166 - -
Lja3g1521 1468 SUPERFAMILY Toll/Interleukin receptor TIR domain 351 499 IPR035897 -
Lja3g1521 1468 Gene3D Ribonuclease Inhibitor 867 1023 IPR032675 -
Lja3g1521 1468 Gene3D Ribonuclease Inhibitor 1024 1210 IPR032675 -
Lja3g1521 1468 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 353 1278 IPR044974 GO:0006952
Lja3g1521 1468 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 346 IPR044974 GO:0006952
Lja3g1521 1468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 334 IPR027417 -
Lja3g1521 1468 SMART till_3 354 496 IPR000157 GO:0007165
Lja3g1521 1468 SMART till_3 14 157 IPR000157 GO:0007165
Lja3g1521 1468 Gene3D - 352 523 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1521 Lja-Chr3 16475972 16484755 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1521 13 342 WRKY Transcription Factor Family AT4G12020 28.614 7.15e-28 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1521 - - lja:Lj3g3v2666470.1 1352.04