Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1520 ATGCAAAAGCTGCAGCTGAGGTACCCTAAAAATCTGGAAGGCCTAGTTGGAATTGAGGAACAATGTGAAGCTGTTGAATGTTTATTGGGAAAAGTTGGAAGAATTGGAGTTTGGGGCATGGGGGGAACAGGTAAGACAACCATTGCTAAAGTCTTGTTTGCCAAACACTTCCCACAATATGACAGTGCATGCTTCTTGCAAAACGTAAGAGAAGAATCAGAAAAGCACGGACTAACACATATCCGTGATAATCTTCTCTCGGAGTTGCTAAAAGAACAAGTTACAACATCCAACTTCTTTGGATCCACATTTGTTGAGAGGAGGCTTAGTAGTAGAATAGTTTTTATTGTGGTTGATGATGTGGCTAGTTCTGAGCAATTAGAATATTTGTGTGCAGAACTCGGTGAGTTGGGAGAAGGTAGCACTCTGATTGTAACAACAAGAGATAAACATTTGCTTGATGGAAGAGTTGAAGAAATATACGAGGTCAACCCCTGGGACTTTGAAAAATCGCTTGTGCTCTTCAGCTTAGCTGCCTTCAAGAAAAGGGAGCCTGAAAAGGGTTACGAGGACATCTCTCGAAGGGCAGTTGAATATGCAGGAGGCATTGCATTAGCTTTGAAAGTTTTGGGTTCTCATTTTCTTTCCAGAAGTACTAGATTCTGTGAAGCTGAATTGAATTATATGAAGAGAAGTAAGGAATCCCTTAAGAAAATTCAAGAACTGTTGCTAGTGAGCTATAATGGATTGTCAGGGCGAGAGCAGGCAATATTTCTGGACATTGCTTCCTTTCTCAAAGACGAAAATGAAGATTCCGTCATAAGGATACTAGATGCATGTGGTTTCAACGCTACTAGTGGAGTGGAAATACTTAAAGATAAAGCTCTAATAAGTATATCAAAGACCAATACTATACAAATGCACGACTTGCTACAAGACTTGGCTTTGGATATAGTTCGAAATGATGTAAGAGGCAGCCGATTGAGGGATATTGAACAAATTCGTGATGTGCTTGAAAATGATAAGGGAATTCCTGAAGTTGAAGGAATAACTTTAGATTTGTCTCAGGAAGTAGATTTGCAACTGAGTGCTGACATATTCAACATGCCTAAATTAAGAATTTTTAGACTATATGTCCCTGCGGGTAAGCAGAAATTAGCCAATGTGCTTTACAATCCTGGATTCCTCCAAAACCATAAGCGAGGTTCTGCTGGATTGAAGTATTTTGAGTGGAACAGATACCCTTCCAAGTCTCTTCCACCAAATTTTTGTGCTAAGTTTCTTGTCGCAATTCGCATGCTGCACAGTGATATTGAAGAACTTTGGCCCGGGACGCAGGATCTGGTGAATCTAGAGACAATTGACCTGAGTGAATGCAAGCAGTTGGTGAAGCTCCCTGATTTGTCTAAAGCGTTAGAACTCAAATGGGTTTATCTATCCGGATGTAAAAGTTTGTGTGTGGTTCATCCATCGCTTTTATCTGTGGACACACTAGTTACTTTGATACTGGATAGGTGTGAGAAACTGAAGAGTCTTATAAGTGAAAAGCATTTAAGGTATCTGAAGGAGCTCAATGTGGATGACTGTTCAAGCCTAGAGAAATTTGCAATGTCGTCCGATTCAATTAAAAGGCTTGATTTGAGCAAGACAGGAGTTAAAAAATTGTACCCATCAATCGGTCATCTAAGCAAGCTTGAGTGGCTCAATCTAGAAAGTTTGAGACTGGAGAATCTTCCTAATGAGTTGTCGCACCTGACATCTCTAAAGGAGCTGAGGATTTCTAACTGCGGAGTAATTGATGAAGAGAATCTACATGTTCTGTGTGATGGCTTACTATCCTTAAAATTACTACATCTAAAGGACTGTTACGAGCTGTTTGAACTCCCAGACAACATCAGTGCCTTGTCATCATTGCGAGAATTAAGGCTCGATGGAAGTAGTGTGGAGAAGTTGCCTACAAGCATCAAGCTTCTTGAAAAACTGGAGATTCTCACCTTAGTGAATTGTAGGAAACTGGAGTTTCTACCTGAGCTCCCGTTGTTCATCATAGAGCTTAACGCTGTCAACTGTACTTCATTAGTGGCGGTATCTACTTTCAAGACCTTTGCAGTCCAGATGAAAGGGAAGGAGAAACACATATCATTTATGAATGCAATGAAACTAAATGAATCTACGCTCCTCCAGATTATGGAAGACGTCATGTTCACAATGAAGAGTGCTGAAATGCAAAATATATACGTAAATAAGTTCAGATTGAATGTCGACAATTTCATTCCTAATAGTGTTGTGGTTTGCTTACCAGGAAGCAGTGTCCCCTCCGGCTCAGGGCAAGGGTCGTTCGCATATCGAACCAGAGGGTCCTCAATTACCATTGAACCTCATGATGGAAGTTTGTCCAAGTGTCTAGGCACCATTTATTCTGTGGTTCTTTCTGCATCCCCTGGAATCAAGGGGCATGGTGCTAAAATCCAATGCCGAATCTACAGGAAAGATGGGGAATGCAAGACCACATGGTATGGCAAAGACATCAGTGAATTTGATTCAGATCATGTTTTCGTATGGCATGGTTCAAGTTTCGATGATGCAAAAGTTTTTGAGTTCTTTGTTACAACTGATAGCGGGGAAAACAATGACCAGATCAAAATAAAAGACTGCAATTGCACTTGGACTTGCAAGGAGCTGGAGATGCAAATAGCTGAGTTAGAAATGAGAGAGAGAAAGGGAGAAAGAAAGAGGCGGGCAGTAGTATGTATGTAG 2757 0.4077 MQKLQLRYPKNLEGLVGIEEQCEAVECLLGKVGRIGVWGMGGTGKTTIAKVLFAKHFPQYDSACFLQNVREESEKHGLTHIRDNLLSELLKEQVTTSNFFGSTFVERRLSSRIVFIVVDDVASSEQLEYLCAELGELGEGSTLIVTTRDKHLLDGRVEEIYEVNPWDFEKSLVLFSLAAFKKREPEKGYEDISRRAVEYAGGIALALKVLGSHFLSRSTRFCEAELNYMKRSKESLKKIQELLLVSYNGLSGREQAIFLDIASFLKDENEDSVIRILDACGFNATSGVEILKDKALISISKTNTIQMHDLLQDLALDIVRNDVRGSRLRDIEQIRDVLENDKGIPEVEGITLDLSQEVDLQLSADIFNMPKLRIFRLYVPAGKQKLANVLYNPGFLQNHKRGSAGLKYFEWNRYPSKSLPPNFCAKFLVAIRMLHSDIEELWPGTQDLVNLETIDLSECKQLVKLPDLSKALELKWVYLSGCKSLCVVHPSLLSVDTLVTLILDRCEKLKSLISEKHLRYLKELNVDDCSSLEKFAMSSDSIKRLDLSKTGVKKLYPSIGHLSKLEWLNLESLRLENLPNELSHLTSLKELRISNCGVIDEENLHVLCDGLLSLKLLHLKDCYELFELPDNISALSSLRELRLDGSSVEKLPTSIKLLEKLEILTLVNCRKLEFLPELPLFIIELNAVNCTSLVAVSTFKTFAVQMKGKEKHISFMNAMKLNESTLLQIMEDVMFTMKSAEMQNIYVNKFRLNVDNFIPNSVVVCLPGSSVPSGSGQGSFAYRTRGSSITIEPHDGSLSKCLGTIYSVVLSASPGIKGHGAKIQCRIYRKDGECKTTWYGKDISEFDSDHVFVWHGSSFDDAKVFEFFVTTDSGENNDQIKIKDCNCTWTCKELEMQIAELEMRERKGERKRRAVVCM* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1520 918 Gene3D - 167 251 IPR042197 -
Lja3g1520 918 Gene3D - 2 160 IPR027417 -
Lja3g1520 918 Pfam NB-ARC domain 34 247 IPR002182 GO:0043531
Lja3g1520 918 Gene3D Ribonuclease Inhibitor 539 760 IPR032675 -
Lja3g1520 918 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 782 IPR044974 GO:0006952
Lja3g1520 918 PRINTS Disease resistance protein signature 34 49 - -
Lja3g1520 918 PRINTS Disease resistance protein signature 108 122 - -
Lja3g1520 918 PRINTS Disease resistance protein signature 446 462 - -
Lja3g1520 918 PRINTS Disease resistance protein signature 200 214 - -
Lja3g1520 918 SUPERFAMILY L domain-like 306 677 - -
Lja3g1520 918 PANTHER NB-ARC DOMAIN PROTEIN 2 782 - -
Lja3g1520 918 Coils Coil 891 911 - -
Lja3g1520 918 Gene3D Ribonuclease Inhibitor 349 538 IPR032675 -
Lja3g1520 918 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 261 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1520 Lja-Chr3 16439554 16443232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1520 15 671 WRKY Transcription Factor Family AT4G12020 30.893 1.16e-70 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1520 - - lja:Lj0g3v0283809.3 1443.71