Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1517 ATGGTTGGAAAGCTGCTCTCACCCAAGCAGCCAATATATCTGGATGGGGACGATTCTCAAGTCATAGAGAACATTGTTAAGAGTATTTGGGGAAAGCTGCGCTCGATGCAATATGATTATGAAGAAGGCCTAGTTGGAGTTGAGGAACAATGTGGAGCAATTGAAGGTTTATCTGGAAAAATTGGAAGACTTGGACTTTGGGGCATGGGGGGAATAGGTAAGACCACCATTGCTAAAGCCTTGTTTGCCAACCACTCCCCCAAATATGACAGCGCGTGCTTCTTGCAAAATATAAGAGAAGAATCACAAATGCACGGACTAACACATATCCATGATCAACTTCTCTCTGAGCTGCTAAAAGAACAAGTTACAACATCCAACTTTTCAGAATCCTCGCTCAATAGTAGAAAAGTTCTGATTGTGCTTGATGATGTGGATAGTTCTGAGCAAATAGAGTCTTTGTGGGTTGGACTCGGTGAGTTGGGAGAAGGCAGCAGTCTCATTGTAACAACAAGAGATAAACATTTGCTTCATGGAACAGTTGATGAGATACATGAGCTCAAGCCTTGGAACTTTGAAAAATCGCTTGTGCTCTTCTGCTTAGGAGCCTTCAAGAAAAGCGAGCCTGACAACGCTTTTGAGGACCTCTCAAAGAGGGCAGTTGAATGTGCAGCAGGCCTTCCATTTGTTTTAAGATTTTTGGGTTCACATTTTTATTCCAAAAATATTGAATTCTGGAAAACTGATTTGATATACTTCAGGAGCAAATTCTTCAAGGAAATTCTAGACGTGTTGAAAGTGAGCTATTATGGATTATCAAGGCAAGAGCAGGCAATATTTCTGGACATTGCTTTCTTTTTCAAAGACCGGAATCAAGATTCTGTCATAAGTATACTAGATGCCTCTGGTTTCAATGCTGCTAGTGGAATAGAAAAACTTAAAGATAAAGCTCTTATAACTATATCAAAGAGAAATACTATACAAATGATTGACCTTCTACAAGACATGGCTTTTGATATAGTTCGACATGATGCAACAGACCCTAGAAGAGGCAGCATATTGAGGGATAGTGAAGAAGTTCGTGCTGTACTTGTAAATGGCAAGGAAACTCCAGATGTTGTTGAAGGAGCACTGTTAAATTTGTCTGAGAATGCGATAGATTCTTATCAAATATGTCAATTTGATGCTGGCATATTCAATCTGCCTAAATTAAGAATTATTAGATTTTATAGCCCCCTATATATATCGGCTTCACGCTATTATTCTTTCAGACCCGATCTCAACAATGAGGGAGGTTCTGCTGAATTGAAGTATTTTGAGTGGACTGAATACCCTTCCAAATCTCTTCCAACAAATTTTTGTGTCAGGTTTCTCGTTGAGATTCGCATGCAGTACAGTAAGGTTGAAGAACTTTGGGATGGGACGCAGGAGCTTGTGAATTTAGAGACAATTGACATGTGTGGAAGCAAATACCTGCAGAGACTCCCTGATTTGTCTAAAGCGTTAAAACTCAAATGGGTTTATCTCTCTGGATGTAAACGTTTGCGGTACATTCATTCGTCGCTTTTATCAGTGGACACACTAGTTACTTTGGCATTGGATAGGTGTTATAATCTGGAGAGTGTTATATGTGATAAGCATTTAAGCTATTTGGAGAACCTCAATCTCTATTACTGCTGCAAACTCAAGAAATTTTCAGTGTCGTCTGATTCATTTAAAAGGTTGAATTTAAGCTGCACAGGAATCAAAAAGCTGTATACATCAATCAGTCGTCTAAGCAAGCTTGAGTGGCTCAATCTATCTGATTGTTATCAGTTGTCTGAACTCCCCGACGACATCGGTGCCTTGTCATCATTGCGTGCATTAAGCCTCGATGAATGCATTGTGGAGAAGTTGCCTACAAGCATCAAGCTTCTTGAAAAGCTTGAGATTCTCTCCTTAAAGAATTGTAAGAAGCTTCGGTCTCTACCTGAGCTTCCGTTGTTAATCAAGGAGCTTAACACCGACGGCTGTACCTTATTAGTGACAATATCAGCTTTAAAGACTTTTTCAGTGAAGATGAAAGGAATGAAGAAACACATATCATTCCTGAATGCAAAGGGACTGATGAATGAATCTTTACTCCTCCAGATTATGGAAGATGTTGTGTTTGCAATGAAGAGGGCTGAGTTGTGCAATATATTTGTAAGAAGCAGTGTTACCGCTTGCTTCTCAGGAAGCAGTGTCCCCTCATTGCCAGGGTCGTCGTTCGTATATCGAAGCACAGGGTCCTCAATTACCATTGAACCTCCTCCTCATGACGATGGAAGGTTGTCCCACAACTGTCTAGGCACCATTTATTCTGTGGTTCTTTCTCCATCCCGGTGGGCTAGTGAGTCGGTTGAAATCCAATGCCGATTCTACGGGAAAGATGGGGAATACATTAATACTACATCATATGGCAAAGAAATCAGGAATAATAGACTTTGGGATAATGTTTTTCTATGGCAAAGTTCGAGTTTCAAAGGTGCACAAGTTTTTGAGTTCGTTGTTACAATTGATAGCAGGGCAACCATTGATGATGACTACAGCAAAATAAAAGAGTGTGGGATTGACTTGATGTTTTGCTCGGATTCTGAGCTTCAGAGTCTCACAAGGGAAGCAGAATTGGAACCGGAGATCAAGGGAGTGGCGCTGGACTTGCGGGAAAATAATTGGAAACCGGAGGGTGCTTACTACTCAAGTGATAGTCCTACTATTATACAAAAGTTTTTTCGCAACAGGAATTGTTGTTGGTGA 2778 0.4053 MVGKLLSPKQPIYLDGDDSQVIENIVKSIWGKLRSMQYDYEEGLVGVEEQCGAIEGLSGKIGRLGLWGMGGIGKTTIAKALFANHSPKYDSACFLQNIREESQMHGLTHIHDQLLSELLKEQVTTSNFSESSLNSRKVLIVLDDVDSSEQIESLWVGLGELGEGSSLIVTTRDKHLLHGTVDEIHELKPWNFEKSLVLFCLGAFKKSEPDNAFEDLSKRAVECAAGLPFVLRFLGSHFYSKNIEFWKTDLIYFRSKFFKEILDVLKVSYYGLSRQEQAIFLDIAFFFKDRNQDSVISILDASGFNAASGIEKLKDKALITISKRNTIQMIDLLQDMAFDIVRHDATDPRRGSILRDSEEVRAVLVNGKETPDVVEGALLNLSENAIDSYQICQFDAGIFNLPKLRIIRFYSPLYISASRYYSFRPDLNNEGGSAELKYFEWTEYPSKSLPTNFCVRFLVEIRMQYSKVEELWDGTQELVNLETIDMCGSKYLQRLPDLSKALKLKWVYLSGCKRLRYIHSSLLSVDTLVTLALDRCYNLESVICDKHLSYLENLNLYYCCKLKKFSVSSDSFKRLNLSCTGIKKLYTSISRLSKLEWLNLSDCYQLSELPDDIGALSSLRALSLDECIVEKLPTSIKLLEKLEILSLKNCKKLRSLPELPLLIKELNTDGCTLLVTISALKTFSVKMKGMKKHISFLNAKGLMNESLLLQIMEDVVFAMKRAELCNIFVRSSVTACFSGSSVPSLPGSSFVYRSTGSSITIEPPPHDDGRLSHNCLGTIYSVVLSPSRWASESVEIQCRFYGKDGEYINTTSYGKEIRNNRLWDNVFLWQSSSFKGAQVFEFVVTIDSRATIDDDYSKIKECGIDLMFCSDSELQSLTREAELEPEIKGVALDLRENNWKPEGAYYSSDSPTIIQKFFRNRNCCW* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1517 925 Pfam NB-ARC domain 63 244 IPR002182 GO:0043531
Lja3g1517 925 SUPERFAMILY L domain-like 329 671 - -
Lja3g1517 925 Pfam Leucine Rich Repeat 457 476 IPR011713 -
Lja3g1517 925 Gene3D - 46 185 IPR027417 -
Lja3g1517 925 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 600 759 IPR044974 GO:0006952
Lja3g1517 925 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 622 IPR044974 GO:0006952
Lja3g1517 925 Gene3D Ribonuclease Inhibitor 571 750 IPR032675 -
Lja3g1517 925 Gene3D Ribonuclease Inhibitor 376 570 IPR032675 -
Lja3g1517 925 PRINTS Disease resistance protein signature 63 78 - -
Lja3g1517 925 PRINTS Disease resistance protein signature 637 653 - -
Lja3g1517 925 PRINTS Disease resistance protein signature 132 146 - -
Lja3g1517 925 PRINTS Disease resistance protein signature 224 238 - -
Lja3g1517 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 283 IPR027417 -
Lja3g1517 925 PANTHER NB-ARC DOMAIN PROTEIN 600 759 - -
Lja3g1517 925 PANTHER NB-ARC DOMAIN PROTEIN 17 622 - -
Lja3g1517 925 Gene3D - 191 278 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1517 Lja-Chr3 16383286 16388978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1517 45 701 WRKY Transcription Factor Family AT5G45050 30.460 1.46e-69 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1517 - - lja:Lj0g3v0095249.1 904.049