Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1511 ATGGGTGGCTCTGGAAGATGGTTCAAATCACTTATTTCTCTCAGAAAATCCTCCACCAATGATCATGAGAAGGGTGGTGATCAGAGTAAGAGAAAGTGGAAGCTATGGGGGAATTCTTCAGAAGGCGTTGGGTTTGGTTCCTCCATGATGAAGGGCCATGGTGGTGGTGGTGCTTCTTCTGACAAAGAAAGAGAAGCGTTTGCTGCTGCAGTGGCTGCTGTGGTGCGAACTCCTCACAGAGGCTTCATGGTGATCAAGCAGGAATGGGCTGCTATTCGAATCCAGACTCTGTTTCGTGGCTTCTTGGCAAGACGGGCTTTGAGGGCACTGAGGGCAGTGGTGAGGCTGCAAGCTATTTTTCGTGGCCGGCTAGTGAGAAAGCAAGCAGCTGTTACCCTAAGGTGCATGCAGGCTCTTGTGCGAGTTCAAGCACGTGTCAAGGCAAGGAATGTGAGCAAGTCTCCACAAGGGAAAGCTGTGCAGAAATCGTTGAAGGATCGTCGCAACCAAGCTGATCCTGTTAAGCAGGCTGAGCGATCAACAGTGGGTGCTAGTCCAAATTCCAGAGCAACTAAACCATTGACTCCTCTCAAGCATCGCAGCCTAGACAATAAGAGCTTGTTTGATCGCTGGATGGCGGCTAAGCCATGGGAGAGCAGGTCGATGAACGATATCCATTTCGACTCGCCTGACATGACTCCAGTGTCCAGGAAAGATCATGACCTTGTTCTTCCATTCAATTCATTTCAACAAAATAGCTTAGTCAAAGCAAGAAGGAATGGTGTGACAACCAGAATTTCAACTAACTCTCTCACAACTAGTCACTCAACTCCATCATCTTCTTCGGCCATAAGCTCTGAATGTATGTATGATGATAGCCCTGTATCAGCGTCATGTACATCAGGATCACCATCTTTACCACCATCCACCAACACTGTTATGGTGGAAGCAAAAGATCAGGAAAGAGGTATTGGCAAAGCAGGCTACATGAATTTGACAGCATCATCCAAGGCTAAACTGAAAGCTTGTAGATGTTCTCAGAAAACAAAGAGAATATTTTTGGATGATTGTCCATCTCGAAGCACGAGAAAAGACTTTCTAAATGGAGATACTAGAAGCATTTCTGGTTCCTATCCTTCATATAATATATGGAAGGATCTCTATGCAACACCTTTAAGGGCAAGTTATCATAAGAGATACACAATGGATGATAAGTAG 1218 0.4573 MGGSGRWFKSLISLRKSSTNDHEKGGDQSKRKWKLWGNSSEGVGFGSSMMKGHGGGGASSDKEREAFAAAVAAVVRTPHRGFMVIKQEWAAIRIQTLFRGFLARRALRALRAVVRLQAIFRGRLVRKQAAVTLRCMQALVRVQARVKARNVSKSPQGKAVQKSLKDRRNQADPVKQAERSTVGASPNSRATKPLTPLKHRSLDNKSLFDRWMAAKPWESRSMNDIHFDSPDMTPVSRKDHDLVLPFNSFQQNSLVKARRNGVTTRISTNSLTTSHSTPSSSSAISSECMYDDSPVSASCTSGSPSLPPSTNTVMVEAKDQERGIGKAGYMNLTASSKAKLKACRCSQKTKRIFLDDCPSRSTRKDFLNGDTRSISGSYPSYNIWKDLYATPLRASYHKRYTMDDK* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1511 405 Pfam IQ calmodulin-binding motif 111 128 IPR000048 GO:0005515
Lja3g1511 405 Pfam IQ calmodulin-binding motif 89 108 IPR000048 GO:0005515
Lja3g1511 405 MobiDBLite consensus disorder prediction 180 194 - -
Lja3g1511 405 MobiDBLite consensus disorder prediction 160 174 - -
Lja3g1511 405 ProSiteProfiles IQ motif profile. 111 138 IPR000048 GO:0005515
Lja3g1511 405 MobiDBLite consensus disorder prediction 267 288 - -
Lja3g1511 405 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 165 - -
Lja3g1511 405 MobiDBLite consensus disorder prediction 147 198 - -
Lja3g1511 405 PANTHER IQ-DOMAIN 5-RELATED 1 165 - -
Lja3g1511 405 SMART iq_5 86 108 IPR000048 GO:0005515
Lja3g1511 405 SMART iq_5 109 130 IPR000048 GO:0005515
Lja3g1511 405 Gene3D - 84 139 - -
Lja3g1511 405 PANTHER IQ-DOMAIN 5-RELATED 180 403 - -
Lja3g1511 405 ProSiteProfiles IQ motif profile. 87 115 IPR000048 GO:0005515
Lja3g1511 405 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 180 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1511 Lja-Chr3 16275064 16277485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1511 1 388 IQD Protein Family AT1G72670 36.927 4.22e-55 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1511 - - lja:Lj3g3v2669620.1 736.487