Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1510 ATGGGACATCACTCTTGCTGCAGTAAACAGAAGGTCAAAAGAGGGCTTTGGTCACCTGAAGAAGATGAAAAACTCATCAACTACATCACAACTTATGGACATGGTTCCTGGAGCTCTGTCCCAAAACATGCTGGCTTGCAGAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAACTATCTAAGACCTGACTTGAAACGTGGAAGTTTCTCTCCTCAAGAAGCATCCCTAATTATAGAACTCCACAGCATTCTAGGCAATAGGTGGGCTCAGATAGCCAAACACCTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAGCATAAAGAAGAAGCTCTTTTCTCATGATAATGTTGTTCCCTGTTTAGCCACATTTTCAGACACTCATCACAGCCACAGAAACATTGGTTGTTCTATGGAAAGTCTCTTCCCTTTAATTGAAAACCCAAATGAGATCCTAAACTTTATTCACCACCCAGATCACCAGCTATACCCTCCCACACCATCCCCAAGCCTACAATGCTTTGATCAAAATGATATTAAGTTAGACATTAACAATTTCCTTCATATTCAGAATCCAATACTAGAAACAGTGCTACCATCCATTAATCCATGCTCCTCTTATGAAGATACATGGTCATCATTGGGTTCTGTATCTCTTCATCTCAATCCAAATCAAGAAAATCAAATCACCACCCCACATTATATTGTTGACAAAACCATCCTCCCTAGTGCATTTCATCAATATGAATGTCACTTAACTGTTGTACCAAAAGTAAGTGAGAGCATTGAAGATTATGCTTGTGACATCCCAGATTCAGATGAGGCTCCAGCAAAAATTCAGTGCTACCAACCAAGTATTTATCCAGAAGATCAAATTTTGGAAACTAATCAACTGGATTACATTGATGCCTTCATGCCATTGCCATCCTCAGCAGCAACCTCTTCATCAGTATCAAGCAGCCAAATAGCCACAAATCCTATTATTCCTTTAGAATGGGAGCCCTGA 1020 0.399 MGHHSCCSKQKVKRGLWSPEEDEKLINYITTYGHGSWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEASLIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLFSHDNVVPCLATFSDTHHSHRNIGCSMESLFPLIENPNEILNFIHHPDHQLYPPTPSPSLQCFDQNDIKLDINNFLHIQNPILETVLPSINPCSSYEDTWSSLGSVSLHLNPNQENQITTPHYIVDKTILPSAFHQYECHLTVVPKVSESIEDYACDIPDSDEAPAKIQCYQPSIYPEDQILETNQLDYIDAFMPLPSSAATSSSVSSSQIATNPIIPLEWEP* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1510 339 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja3g1510 339 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Lja3g1510 339 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja3g1510 339 CDD SANT 17 61 IPR001005 -
Lja3g1510 339 PANTHER MYB DOMAIN PROTEIN 55 1 255 - -
Lja3g1510 339 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja3g1510 339 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja3g1510 339 PANTHER TRANSCRIPTION FACTOR MYB26 1 255 - -
Lja3g1510 339 Gene3D - 69 116 - -
Lja3g1510 339 Gene3D - 11 67 - -
Lja3g1510 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lja3g1510 339 CDD SANT 69 109 IPR001005 -
Lja3g1510 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lja3g1510 339 SMART sant 66 114 IPR001005 -
Lja3g1510 339 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1510 Lja-Chr3 16215094 16216460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1510 1 118 MYB Transcription Factor Family AT3G13890 94.915 1.36e-79 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g1510 Myb_DNA-binding 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1510 K09422 - gmx:100785147 447.973