Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1505 ATGTTCCATCAACAACAACAGCAACAACAACCTGTGATGGAAGAAAACATGTCAAATTTGACTTCTGCATCAGGTGAAGCTAGTGCTAATTCCTCAGGAAACAGAACTGAAATTGGCACCAGTTACCCTCCTCAACAATACTTGGATCATCCACCCCCAACTCAAACTCAACCAGTACTAAAGAAAAAGAGAAACCTTCCAGGAAACCCAGACCCAGATGCTGAAGTGGTTGCTATGTCCCCTAAGAGTCTTTTAGCCACAAATAGATTCTTCTGTGAGATCTGCAGCAAAGGGTTTCAAAGAGACCAAAATCTCCAACTTCACAGAAGAGGGCATAATTTACCATGGAAGCTGAAGCAGAGAACAAGCAAAGAGGTGAAGAAGAAGGTGTACGTGTGCCCGGAACCTACCTGCGTGCACCATGACCCGTCGAGGGCCCTGGGGGACCTCACAGGGATCAAGAAGCACTTCAGCAGAAAGCATGGTGAGAAGAAGTGGAAATGTGAGAAGTGTTCCAAGAAGTATGCAGTTCAATCAGATTGGAAAGCTCATTCCAAAACCTGTGGCACCAGGGAGTACAGATGTGACTGTGGAACCCTTTTCTCAAGGAGGGACAGTTTCATAACCCATAGAGCATTCTGTGATGCACTAGCAGAGGAGAGTGCAAGAGGTGAGACAGGTGGCACATTAACCAACAATCCACTTGTACTACCACCACCCTCACAATCACAACAACCTTCATCCTCCTCTAATCATCATCAACACATGATAAATCTCCAAACCCAATTCAATCATCATCTCCAGAACAACCAGAACCTCCTCCATGGTTTCCCATTGAAAAAAGAGCAGCTAAGTTTCAACTTTGGTCAAGAAATCATGCCCCCTTGGCTTGGCCCACAAAGTAGTACTATTAATAATGTTGATCATCATCATCATAATCTCTCCTCTGCATCAATGTTCTCATCCCAAGAAGAAAACCCTAACCCTAGCATGGGCCCCACCCTCCCACCCTACCAAACAGTTCCTCCTTCCCCACACATGTCAGCCACAGCATTGCTGCAGAAAGCAGCTCAAATGGGTGCAACCATGACCACCACCACAACAGCTGCATCAGCACCAGCCATGATCAGTAGGACCCACCACCAGCCTCACGTGCCTCCTCATTCAGCTGCCAACAACAATTCTTCAATTGGTAATTTTGGTTTCAACTTGTCCTCACGTGATGCTGCTGCTGCTGGTGTTACTGCTGCTCCACCATCCCTTCTTCATGATGTTATCAACTCTTTCTCTTCTAATTCTGCTTTTGAAGGAAACCCTTTTGAGGACTCATTTAGTGCCATTCTAAATTCAAAGAAAGAACTTAACTTTCATGATAATGACACCCTTTCTAAAAAGGCCACCACCACCACGGATAGCGGTGGTGGTGGTGGCGGCGGCGGCGGAAATGATGACTTGACGAGAGATTTCTTGGGTCTAAGACCCCTCTCTCATAGTGATATTCTCAGCATAGCTGGCATTGGAAACTGCATGAGTGATCAAGAAAACCAATCTCAAAAGCCATGGCAAGGTTAG 1572 0.4599 MFHQQQQQQQPVMEENMSNLTSASGEASANSSGNRTEIGTSYPPQQYLDHPPPTQTQPVLKKKRNLPGNPDPDAEVVAMSPKSLLATNRFFCEICSKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVKKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARGETGGTLTNNPLVLPPPSQSQQPSSSSNHHQHMINLQTQFNHHLQNNQNLLHGFPLKKEQLSFNFGQEIMPPWLGPQSSTINNVDHHHHNLSSASMFSSQEENPNPSMGPTLPPYQTVPPSPHMSATALLQKAAQMGATMTTTTTAASAPAMISRTHHQPHVPPHSAANNNSSIGNFGFNLSSRDAAAAGVTAAPPSLLHDVINSFSSNSAFEGNPFEDSFSAILNSKKELNFHDNDTLSKKATTTTDSGGGGGGGGGNDDLTRDFLGLRPLSHSDILSIAGIGNCMSDQENQSQKPWQG* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1505 523 Gene3D Classic Zinc Finger 144 223 - -
Lja3g1505 523 SMART c2h2final6 131 161 IPR013087 -
Lja3g1505 523 SMART c2h2final6 166 186 IPR013087 -
Lja3g1505 523 SMART c2h2final6 90 112 IPR013087 -
Lja3g1505 523 MobiDBLite consensus disorder prediction 225 253 - -
Lja3g1505 523 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 19 508 - -
Lja3g1505 523 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Lja3g1505 523 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 508 - -
Lja3g1505 523 MobiDBLite consensus disorder prediction 1 43 - -
Lja3g1505 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Lja3g1505 523 MobiDBLite consensus disorder prediction 223 253 - -
Lja3g1505 523 MobiDBLite consensus disorder prediction 1 76 - -
Lja3g1505 523 MobiDBLite consensus disorder prediction 462 485 - -
Lja3g1505 523 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1505 Lja-Chr3 16154449 16157676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1505 13 510 IDZ Gene Family AT1G55110 48.104 5.86e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g1505 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1505 K25870 - gmx:100808344 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5026 3 92444176 92447140 Lja3g1505 3 16154449 16157676 PCT