Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1502 ATGAACAACAACCACAACCACAGCCACAACAACAGCACCATCACCACCACCACCACCATCACCAACTCATCAAGAAATGGTAGCAGCCTCAGCAGCGGCAGCACCACTCAGGCATGCGCCGCATGCAAGTACCAACGCCGGAAATGCGCGCCGGACTGCATCCTCGCGCCGTATTTCCCCCACGACCGCCAGCGCCAATTCCTCAACGCTCACAAGCTATTTGGCGTCAGCAACATCACCAAAATCATCAAGTACCTTGACCCTCCGCTGAAGGATCAAGCCATGCGCACCATTATCTTCCAGGCTGACATGCGCGCCACCGATCCGGCTCAGATCGAGTACCACACCGCGGAACTCGACCTCATCCTTCAACAGCTAGCCATTTTCAGAGCTCAAGCCCAAGCCCAACAACAACACCATCATCAACAACATGTCTATGGTGTTGATCATGTGATGAATAATGTGACAGATCCGTTGAGTTTGTATACCAACCAACCTGCATCTTATAATCATTATCCTCATCAACAAGTGCAGCCACAACAGGATCAGTATGTGATGGTGCATGAAGCTACTGGGGTTAATAATGAAAATGGCTGCTCTACCCCTTTGCAAGAACATATTAACACGTGGGCTATGCACAATTCTATGTCCCTTTCATCGCTCTCGTTGCAGGGGCAGAGTAGTAATGCAAGCGATGAGTATGATCACAAGCCAATGCTTGACATGCCTTCTGATCATGAAAGAAGTAATGAGTTAGGAGGATTCGATTCTGAAGATTTAGTTCATAGTGATGAAGCAGTTTTGTTTAAGATAGACGACACGGTGATAAAAGCGGAGGCTGATTGCATGCAGCAAGCTCAAGACCATGATCTGAAAGGTGCAGCAACTTTGTTCACTCTCACAAATTGTACTAGCTGA 918 0.4815 MNNNHNHSHNNSTITTTTTITNSSRNGSSLSSGSTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKYLDPPLKDQAMRTIIFQADMRATDPAQIEYHTAELDLILQQLAIFRAQAQAQQQHHHQQHVYGVDHVMNNVTDPLSLYTNQPASYNHYPHQQVQPQQDQYVMVHEATGVNNENGCSTPLQEHINTWAMHNSMSLSSLSLQGQSSNASDEYDHKPMLDMPSDHERSNELGGFDSEDLVHSDEAVLFKIDDTVIKAEADCMQQAQDHDLKGAATLFTLTNCTS* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1502 305 Pfam Lateral organ boundaries (LOB) domain 38 113 IPR004883 -
Lja3g1502 305 MobiDBLite consensus disorder prediction 1 34 - -
Lja3g1502 305 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 32 243 - -
Lja3g1502 305 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Lja3g1502 305 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 32 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1502 Lja-Chr3 16087567 16089345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1502 37 212 AS2 family AT3G13850 52.356 1.12e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja3g1502 LOB 5.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1502 - - pvu:PHAVU_010G138500g 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5028 3 92462152 92464220 Lja3g1502 3 16087567 16089345 PCT