Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1500 ATGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCACCACCTCTCAAAAAACACGACGCTTTCATCAGCTTCAGAGGCGAAGACACTCGCCCCAACTTCACAAGCCACCTTCATTCTTCTCTATGCAGAAACTCCATTGAAACCTACATAGACTACAAGATCGACAAAGGAGATGAAGTCTGGCCACAACTCGAGAAAGCCATCAAAGATTCCACCCTCTTCTTGGTTATCTTCTCTGAAAACTATGCGTCTTCCACATGGTGCTTGAACGAGCTGGTTCAGATAATGGACTGCAACAGAAACGATGAAGATGTTGTTGTGATTCCTGTGTTCTACCAGGTTGACCCTTCGCACGTGCGGAAGCAGAGTGGGAGTTACCGCACGGCGTTGGCGAAACACAAGAAGCAGGGGAAGGACAAGATTCAGAAGTGGAAGGATGCTCTCTCTGAAGCTGCAGATTTACCTGGTTTCGATTCTAGTGGATACGGGAATGAGCTTGATTTGATTGAAGACATCATCCAAATGGTTTTACAGAAACTAGATCTCAAGTACACAAGTGAACTTAGATGCCCTTTCATAGCTGATGAAAATTATTCCCAAGTTGAGTCTTTAGTAAAAGTTGATTCAGTTAAGGTTCAAATAATTGGAGTTTGGGGCATGGGAGGCATTGGCAAGACAAGCCTTGCTGCTGCTGTTTTTCATGATGTGTCTTCCCAATATCAGGGTAGTTGCTTCTTAGAGAATGTGACGGAAGAATCGAAAAGGCATGGGGTCAATTACATATGCAACAGACTTCTTTCCAAGTTACTAAAAGAAGATGCTGGTATTGACACTCTCAGGGTTATACCTTCTATTGTTCTGAGAAGGCTTAGACGTATGAAAGCTTTGATTGTACTAGATGATGTGAATACTTCAGAAATTCTGCAGAATTTGGTTGGAGTAGGGCGTGACTGGCTAGGAGCTGGTAGCAAAGTCATTGTGACAACTAGAAATAAGCATGTGCTTATAAGTGGAGAAGTTGATGAAATTTATGAAGTCAAGAAAATGAGCTATCAAAACTCTCTTCAGCTTTTCAGCTTGAATGCTTTTAACAGTACCTTCCCTAAACAGGGATATGAGGAGCTATCAAAAAAAGCAGTTGCTCATGCCAAAGGCATCCCTTTAGCTTTGAAAGTTTTGGGAGCATTCCTTCGTTCCAAAAGTAAAAAAGAATGGGATAGTGCACTATCTAAACTGAAGGAGATTCCCAATCCAGAAATTCAGAAGGTGTTGAGACTGAGTTATGAGCAGTTAGATGATACAGATAAAAATATATTTCTTGACATGGCATGCTTTTTTAAAGGATGTGGAAGAAACAAAGTAACAAAAGTATTAAATGCTTGTGGTTTCTTTGCAGATATCGGGATAAGAAACCTCTTAGACAAGGCTCTTATAACTATTGATTTAAATAATTGCACACAAATGCATGACTTGATACAAGCAATGGGTAGGGAAATTGTTCGTAAAGAATCTCCTAAAGATCCTGGACAACGCAGCAGATTGTGGGATCCTGAGGAAGTTTGTGATGTATTGACAAATAACAGAGGAACTGGTGCAGTCGAAGTCATATGGTTAGACATGGCTCAAATTAAACATATAAATTTAAGCCCCAAAGTATTTGAAAAGATGCAAAAGCTAAGGTTACTTGCTTTTGAAGGCCTCAAACGAGACTTTAAAAGAATCAATTGTGTGTACCTTCCAAAGGGTCTTCAATTCTTGCCTAGAAACTTAAGATATTTTGAGTGGGATGGATTTCCAACAAAATATTTGGCACCAAAATCTTGTTCAGAGAAGCTTGTTGAGCTTCCCCTGCCATACAACAATGCGGAAAAACTTTGCCACAGAGTACAGAATCTTCCAAATTTAGAGGAAATTGACCTAGGTTGCTCCACATGCCTGAAAGAGTGTTCAAATTTGTCCCGAGCCCCAAATCTTAAATTAGTAGAACTCAGCCACAGTCAAGGCTTGCCTCTTCTTCCTGGAAAGTTTGCCAGTGAAATTAGGCTTTCTGACTCAAGCAAACAAGAATGTGACACTTTGATCAACTTAAGAAAAGTACTAACTAGCCCTGGCTTCTGCAGTGTAAGACGTCTATTTTTTTACTGTTGTCATAACTTGTCTCAACTCCCGGACAATATCTCTTCCTTATCATCATTAGAGTATTTAAGACTACATGATTGCAACATCATAAGCTTGCCCCAAACCCTTAAGGATCTTCCGCGACTTCAACATCTTGAAGTTGATAAATGTAAAAAGCTTCAATCTATACCTGTGCTTCCGCAGTCCATTCAATGCTTCCATGTATGGAACTGCGAATCTCTTGAGGAAATATTAAGTTCAAAGAGTGAACCATCCATAAAACATCAGTATACTTTTCTGATTCCTAACTGCATAAGATTGAATGGAGATTCATACCATGCTATTTTGAAAGATGCCACTGTTGGGGTTGAACTTGGAGCAAAACCACTGTCAGGTGTAGTACTAGATGATGGGGATAATGATGATGATGAAGATGGTGATGAGGAGGAGGAGGAAACATATGCATTTGAAACCGTAAGAAGTGGCAAGGTTTGCTACTTTTTACCAGCTAGAAGCGACCAACTTCAAGACTGGTCTGATTACCACTCTACACGAGCTCTCTTCACTATTGAACTCCCCTCTAATGTGTGGGGTTTTGTTTTCTACTTGGTTCTTTCACAAGTCCAATCATGCCACATTGGATACGGTGGGAGTTTCGGATGTAAATGCTGCTTAGAAACTAGTTGGGGTGAAGAAATCAATATTACAAGTTTCTTTGTAGCTGAAAGCATCTGGTTTAATTCTCATGCATCACTGGAAATGGTCTCAGATCATGTGTTTTTATGGTATGATGCACAATGTTGCCAGAAGATAATGGAAGCAATTCAACAAAGTAGAAAAGCCATTAATGGCAGGACAACCAGTTACAAATCAAAGATTACATTTGAATTCTTCGCTCAAAATATAGAGAATGAGGAAGCAGTAATAAAAGAGTGTGGGTTACAGTGGCTATACCCCTCAGAAGATCAAATTTTGGTGGAAGGGGGAGGGTGTAAATCCAAGAGAAGTCTGGAAATTGATGAATTAGAAGCCGGTGCAGTCCAAAATAGAGTCGAGGAGTCAGAATCTGATGAGCAAGAAGAAATGGTTCCTCCAAGTAAGAAACTAAAGCAACATGTCTCTGGAACTTCCTCCAATCTGGAATCAGAAGAAATGGAAGACTTGAGATTTACCGGGTGA 3303 0.4012 MASSSSSSSSSSSSPPLKKHDAFISFRGEDTRPNFTSHLHSSLCRNSIETYIDYKIDKGDEVWPQLEKAIKDSTLFLVIFSENYASSTWCLNELVQIMDCNRNDEDVVVIPVFYQVDPSHVRKQSGSYRTALAKHKKQGKDKIQKWKDALSEAADLPGFDSSGYGNELDLIEDIIQMVLQKLDLKYTSELRCPFIADENYSQVESLVKVDSVKVQIIGVWGMGGIGKTSLAAAVFHDVSSQYQGSCFLENVTEESKRHGVNYICNRLLSKLLKEDAGIDTLRVIPSIVLRRLRRMKALIVLDDVNTSEILQNLVGVGRDWLGAGSKVIVTTRNKHVLISGEVDEIYEVKKMSYQNSLQLFSLNAFNSTFPKQGYEELSKKAVAHAKGIPLALKVLGAFLRSKSKKEWDSALSKLKEIPNPEIQKVLRLSYEQLDDTDKNIFLDMACFFKGCGRNKVTKVLNACGFFADIGIRNLLDKALITIDLNNCTQMHDLIQAMGREIVRKESPKDPGQRSRLWDPEEVCDVLTNNRGTGAVEVIWLDMAQIKHINLSPKVFEKMQKLRLLAFEGLKRDFKRINCVYLPKGLQFLPRNLRYFEWDGFPTKYLAPKSCSEKLVELPLPYNNAEKLCHRVQNLPNLEEIDLGCSTCLKECSNLSRAPNLKLVELSHSQGLPLLPGKFASEIRLSDSSKQECDTLINLRKVLTSPGFCSVRRLFFYCCHNLSQLPDNISSLSSLEYLRLHDCNIISLPQTLKDLPRLQHLEVDKCKKLQSIPVLPQSIQCFHVWNCESLEEILSSKSEPSIKHQYTFLIPNCIRLNGDSYHAILKDATVGVELGAKPLSGVVLDDGDNDDDEDGDEEEEETYAFETVRSGKVCYFLPARSDQLQDWSDYHSTRALFTIELPSNVWGFVFYLVLSQVQSCHIGYGGSFGCKCCLETSWGEEINITSFFVAESIWFNSHASLEMVSDHVFLWYDAQCCQKIMEAIQQSRKAINGRTTSYKSKITFEFFAQNIENEEAVIKECGLQWLYPSEDQILVEGGGCKSKRSLEIDELEAGAVQNRVEESESDEQEEMVPPSKKLKQHVSGTSSNLESEEMEDLRFTG* 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1500 1100 Pfam TIR domain 19 188 IPR000157 GO:0007165
Lja3g1500 1100 MobiDBLite consensus disorder prediction 1054 1100 - -
Lja3g1500 1100 Gene3D - 194 344 IPR027417 -
Lja3g1500 1100 SMART till_3 19 156 IPR000157 GO:0007165
Lja3g1500 1100 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 159 IPR035897 -
Lja3g1500 1100 PRINTS Disease resistance protein signature 291 305 - -
Lja3g1500 1100 PRINTS Disease resistance protein signature 752 768 - -
Lja3g1500 1100 PRINTS Disease resistance protein signature 385 399 - -
Lja3g1500 1100 PRINTS Disease resistance protein signature 216 231 - -
Lja3g1500 1100 SUPERFAMILY "Winged helix" DNA-binding domain 421 526 IPR036390 -
Lja3g1500 1100 Gene3D Ribonuclease Inhibitor 529 815 IPR032675 -
Lja3g1500 1100 Gene3D - 17 188 IPR035897 -
Lja3g1500 1100 Gene3D - 350 434 IPR042197 -
Lja3g1500 1100 Pfam NB-ARC domain 204 432 IPR002182 GO:0043531
Lja3g1500 1100 ProSiteProfiles TIR domain profile. 18 182 IPR000157 GO:0007165
Lja3g1500 1100 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 672 IPR044974 GO:0006952
Lja3g1500 1100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 443 IPR027417 -
Lja3g1500 1100 SUPERFAMILY L domain-like 540 801 - -
Lja3g1500 1100 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1500 Lja-Chr3 16067647 16076440 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1500 18 795 WRKY Transcription Factor Family AT4G12020 30.934 2.59e-94 329