LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g1498	ATGGCTTCTTCGTCCTCTCTCAAGAAACACGAGGTCTTCATCAGCTTCAGAGGCGAGGACACTCGCCCCAGCTTCATCAGCTTCCTCCATGCTGCTCTCTGCAGAACCTACATTGAGACCTACATAGACTACAGGATCGACAAAGAAGATGAGGTCTGTCCTCAACATGAGAAAGCCATCAGAGATTCCACTCTCTTCTTGCTCATCTTCTCTGAAAACTACGCGTCATCCACATGCTGCTTGAACGAGCTGGCTGAGATTATCAAGTGCAAGAGAGATGATGAAGACATTGTCGTCATCCCTGTGTTCTACAAGATAGAGCCGTCACAGGTGAGGAAGCAGAGCGGGAGTTACCACACGGCGTTCGCGAAGCACAAGAAGCAGGGGAAGGACAAGATTCAGAAGTGGAAGGATGCTCTCTTTGAAGCTTCCAATTTCTCTGGATTTGATTCTACTGGATACAGGACTGAATCTGACTTGATTGAAGACATCATCAAAACGGTTTTACGAAAGCTAAATCAAAAGTACACGAATGAATTGAGATGCCTGTTCATACCTGATGAAAACTATTCACGCATTGAGTCTTCATTAGAAACTGATTCAAGTGATGTTCGAATAATTGGACTTTGGGGAATGGGAGGCATAGGCAAGACAAGCCTTGCTGCTGCTATCTTTCAGAAAGTGTCCTCCCAGTATGAGGGTAGTTGCTTCTTAGAAAATGTGACAGAAGAATCTAACAGGCGTGGACTCAATTACACATGCAACAGACTCCTTTCTAAGTTGCTAAAGGAAGATCTTGGCATTGACACTCCCAAAGTGATACCTGCTATTGTTATGAGAAGACTTAGACGCACAAAATCTTTCATTGTACTAGATGATGTGAGTACTTCACAGCTTCTAGAAAGTTTGATTGGAGCCGGGCGTGACTGGTTAGGAGCTGGTAGCAGAGTCATTGTGACTACCAGAGACAAGCACGTGCTTTTAAGTGGAGGAGTTGATGAAATTCATGAAGTCAAGGAAATGAACCTTCAAAACTCCCTTCGGCTTTTCAGCTTGAATGCTTTTAATCAAATCCTCCCCAAACAGGAATATGAGGAGGTATCAAACAAAGCAGTTGCTTATGCCAAAGGCAACCCTTTGGCTTTGAAAGTTTTGGGATCATTTCTTCGTTCCAAAACTAGAAAAGAGTGGGACAGTGCATTAGCTAAACTGAAGGAGATTCCCAATGCAGATATTCAAAAGGTGTTGAGATTGAGCTATGATGATTTAGATGATACAGAGCAAAATATATTTCTAGACATTGCATGTTTTTTCAAAGGAAGTGGAAGAAAGAAAGTAACAAAAATATTAAATGCTTGTGGTTTCTTTGCAGATATTGGGATAAGAAACCTTTTAGACAAGGCTCTTATTACTATTTCTTCATATAATGTCATTCAAATGCATGACCTGCTACAAGAAATGGGTAGGGAAATTGTTCATGAGGAATCTGTCAAAAACCCTGGGCAGCGCAGTAGACTGTGGGACCCTCAGGAAGTCTGTGATGTATTGACAAATGATAGAGGAACTGGTGCAGTTGAAGGCATAGTGTTAGATATGAGTCAAATTACACCCATAAATTTAAGCTCCGAGGCATTCAAAAGCATGTGGAACCTAAGGGTACTTGCCTTCGAAGCCTACAATCGGGATGTTAAGAGAATTAACTCTGTGAACCTTCCAACGGGTCTTGACTCATTGCCTAAAGAGTTAAGATGTTTTGCATGGAGGGGATATCCATTGAATTCTTTACCATCAGCTTTTCGTCCTGAGAAGCTTGTTGAGCTTCACCTGCCATACAGCAATGTGGAAAAACTTTGGAACGGAGCACAGAATCTGCCAAGTTTAGAGAGAATTGACCTTAGTGAGTGCACAAGCTTGACAGAGTGTCCAAATTTGTCCCGTGCCCCAAATGTTAAACATGTTGTGCTAGGCAAATGTGAAAGTTTGACTCATGTTGATCCATCCATTTTCACACTCCAGAAACTTGTTGAATTAGATGTGAGTGGATGCAAGTCACTTAAGAGCCTAAGTTGCAGCTCTTCTTCACCATCCCTCAGAAGATTCTATGCCTGGGGTTGCTTCAATCTCCAAGAGTTCACAATCACATCAATGCCCTCCAGTACCAGTGGTCCTTCCACAACTGGTTTGTCTTCGCAGCTAGAAGGGTCATGTTTGAAGAATGAGGTGCCCTCATCATCTTCCCACATCAGAAACCTTGAACTCTTTTCTTTTCCCATCTGTGAGAGTCTCAAAGATCTCCCTGAAAACTTAGCCTATCAAATCACACTTTCAGACTCAGGAAAAAATGAATGTGACACTTTGATAACCTTACATAAAGTACTACCTAGCCCTTGCTTTCGACATGTAAGACGTGTATTTTTTTTCCTTTGTCACACTTTATCTGAACTCCCAGACAACATCTCCTTGTTATCATCATTAGAGTATTTAGGACTGTTTTTTTCTGCCATCAGAAGCTTGCCTGAAAGCATTAAGTATCTTCCACGACTCAAATTTCTTGAACTCGGTGAATGTAAAATGATTCAATCTATACCTGCGCTTCCGCAGTCCATTGAGTGCTTCTTTGTCTGGAACAGCGAATCTCTTCAGAATGCGTTGACTTCGGTGAGTGAACCATCCAAAAAACCTGACAAGTGCACTTTTCTGCTTCCTAACTGCATAAAATTGGATCAGCCTTCATTCAATGCCATTCTGAAAGATGCCATTTTTAGGATTGAACTTGGTGCAGAACCAATGTCAGCAGAAGATGATAATTATAATGATTTATTTAATGACTTGTACATTTCTGAAGCTGTAAGAAGTGGAAAGATTTGCTACTTGTTACCTGCTGGAAACTGCGAAGTTGGAGACTGGTTCCATTACCACTCTACCCAAGCTTTAGCCACTATTGAGCTACCTCCTAATCATTCGGGATTCATTTTCTTCTTGGTCCTTTCTCAAGTTCAAACATATCACATTGGATACCGTGGAAGTTTTGGATGTGAATTTTGCTTGGAAACTAGTTGGGGTGAAATGATCATTGTAAAAAGTTTCTTTGTAGATGAAAGCATTGTGCTTAATCCGCATACATTATTTGATATAATGTCAGATCATGTGTTTTTATGGTATGATGCAAAATGTTGCCAGCAGATAAGGGAAGCAATCAAAGAAATAAAAGCCAAAGACGGATGCGCCGCTGCCAATCCAAAGCTTGCATTTAAATTCTTCGCTCGAACTCAGGATAATATGGAAGCAGTGATAAAGGAGTGTGGGTTTCGCTGGATATATTCCTCAGAAGATCAAATAGTTGAGGAAGGTGAAGAATGTGAATCTGAGACATGTGGGGAAACCCACAGAGGTGAAGGCTCTGACTGTGATGAGCAAAAAGAAACTGTTACTCCAATAAAGACATTCAAGCAAAGCCAGATCTTGGACAAATTACTGTTACAAAATGAAGAACTGGAAATTGATCCAACTTAA	3513	0.4119	MASSSSLKKHEVFISFRGEDTRPSFISFLHAALCRTYIETYIDYRIDKEDEVCPQHEKAIRDSTLFLLIFSENYASSTCCLNELAEIIKCKRDDEDIVVIPVFYKIEPSQVRKQSGSYHTAFAKHKKQGKDKIQKWKDALFEASNFSGFDSTGYRTESDLIEDIIKTVLRKLNQKYTNELRCLFIPDENYSRIESSLETDSSDVRIIGLWGMGGIGKTSLAAAIFQKVSSQYEGSCFLENVTEESNRRGLNYTCNRLLSKLLKEDLGIDTPKVIPAIVMRRLRRTKSFIVLDDVSTSQLLESLIGAGRDWLGAGSRVIVTTRDKHVLLSGGVDEIHEVKEMNLQNSLRLFSLNAFNQILPKQEYEEVSNKAVAYAKGNPLALKVLGSFLRSKTRKEWDSALAKLKEIPNADIQKVLRLSYDDLDDTEQNIFLDIACFFKGSGRKKVTKILNACGFFADIGIRNLLDKALITISSYNVIQMHDLLQEMGREIVHEESVKNPGQRSRLWDPQEVCDVLTNDRGTGAVEGIVLDMSQITPINLSSEAFKSMWNLRVLAFEAYNRDVKRINSVNLPTGLDSLPKELRCFAWRGYPLNSLPSAFRPEKLVELHLPYSNVEKLWNGAQNLPSLERIDLSECTSLTECPNLSRAPNVKHVVLGKCESLTHVDPSIFTLQKLVELDVSGCKSLKSLSCSSSSPSLRRFYAWGCFNLQEFTITSMPSSTSGPSTTGLSSQLEGSCLKNEVPSSSSHIRNLELFSFPICESLKDLPENLAYQITLSDSGKNECDTLITLHKVLPSPCFRHVRRVFFFLCHTLSELPDNISLLSSLEYLGLFFSAIRSLPESIKYLPRLKFLELGECKMIQSIPALPQSIECFFVWNSESLQNALTSVSEPSKKPDKCTFLLPNCIKLDQPSFNAILKDAIFRIELGAEPMSAEDDNYNDLFNDLYISEAVRSGKICYLLPAGNCEVGDWFHYHSTQALATIELPPNHSGFIFFLVLSQVQTYHIGYRGSFGCEFCLETSWGEMIIVKSFFVDESIVLNPHTLFDIMSDHVFLWYDAKCCQQIREAIKEIKAKDGCAAANPKLAFKFFARTQDNMEAVIKECGFRWIYSSEDQIVEEGEECESETCGETHRGEGSDCDEQKETVTPIKTFKQSQILDKLLLQNEELEIDPT*	1171

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g1498	1170	Pfam	NB-ARC domain	192	422	IPR002182	GO:0043531
	Lja3g1498	1170	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	7	832	IPR044974	GO:0006952
	Lja3g1498	1170	Pfam	TIR domain	9	178	IPR000157	GO:0007165
	Lja3g1498	1170	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	7	832	-	-
	Lja3g1498	1170	SUPERFAMILY	Toll/Interleukin receptor TIR domain	5	149	IPR035897	-
	Lja3g1498	1170	SMART	till_3	9	146	IPR000157	GO:0007165
	Lja3g1498	1170	Gene3D	Ribonuclease Inhibitor	729	892	IPR032675	-
	Lja3g1498	1170	Gene3D	Ribonuclease Inhibitor	525	720	IPR032675	-
	Lja3g1498	1170	Gene3D	-	170	333	IPR027417	-
	Lja3g1498	1170	PRINTS	Disease resistance protein signature	375	389	-	-
	Lja3g1498	1170	PRINTS	Disease resistance protein signature	206	221	-	-
	Lja3g1498	1170	PRINTS	Disease resistance protein signature	281	295	-	-
	Lja3g1498	1170	PRINTS	Disease resistance protein signature	622	638	-	-
	Lja3g1498	1170	Pfam	Leucine Rich Repeat	603	622	IPR011713	-
	Lja3g1498	1170	ProSiteProfiles	TIR domain profile.	8	172	IPR000157	GO:0007165
	Lja3g1498	1170	Gene3D	-	341	424	IPR042197	-
	Lja3g1498	1170	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	181	434	IPR027417	-
	Lja3g1498	1170	Gene3D	-	7	169	IPR035897	-
	Lja3g1498	1170	SUPERFAMILY	L domain-like	480	869	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g1498	Lja-Chr3	16053685	16058992	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g1498	5	848	WRKY Transcription Factor Family	AT4G12020	32.436	2.89e-112	384

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g1498	-		-	mtr:MTR_8g433020	1442.94