Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1496 ATGGTACTTCAGCTGATTCTCCTGCTAATTAAGCTACATTTAGTAGTCAGTAGTCAACAGCTTCAAGAATATGCAGCCACCAATCTGCTACATTCCAGAACCAGAAGCCTTTTAAGTAATGCAGTCTTACCATCAGTGTTATCTTCTGAAGTTCCTTCAAGTATTGCAGACCCACCTGCAGAGTCATCTTCTGGTATTGCTGGAAGTATTGCACTTCCACCTTCCAAGTCTATGACCAAAACTCCTGCAAAGAAATGGATGCATCATAAGCATCACTATTCCAGAAGAGAGAACCAATATCCAACTCCAGGGCCAACCTACCCAATCCAGGCTCCTACTTACAGCCATCAAGGTCCTTCAGCCTTCGAATCACTACCTCCTTTCTCTTCAAAGAGCAAGGATATCCGCGCACCTTCACCTGCACCATCACCGGCATTACTGTCAGGCCACCTGGATGCAGCGCCCTCTCATTCACCTAGAATTTCACCTCTAGGTTCATCACTAAAGAAGATAAAGTCTCCACCACCAGCATATACATTGGTTCTGCCTCCTCCACCTCCTAATAAGGATTGCTTGTCCATGACTTGCTCAGAGCCCTTGACATATACACCTCCGGGATCACCTTGTGGCTGTGTTTGGCCGCTTCAAGTTAAGCTTCGTATCGGCGTCGCAATATACAAGTGTTTTCCTCTGGTTTCAAAGCTAGCTGAGGAAATTGCAGCAAGCGTTTTTCTGAACCATAGCCAAGTTCGCATCGTGGGAGCTGATGCGGCTAATCAACAACTAGAGAAAACCAATGTTCTCGTAAACTTGGTGCCCAAAGGAGTAAAATTTGATGATACCACAGCATTTTCAATGTACAAGAAATTCTGGCACAGGGAGATTCTACTAGATGCTTCGCTCTTTGGTGCTTATGAAGTACTCTATGTTCATTATCCAGGTCTTCCACCATCTCCACCTTCAACTCCTTCAGGTGTTTCTAGTATAGATGATGGACCAAATCCAGGTCATGATAACAATGGAATGATGATGAAACCTTTAGGAGTAGATGTCTCAAAGAAGGAAAAAGAAGGAAGTAATGGACGAATGATTTTTATCATTGTTCTGTCATCAATTACTGCTTTTGTTCTATTCATAGGACTTGCTTGGCTTTGTATGTTGAAATGCGGTACCTATGTTCATAAAAAAGAACAAGTTCCAGATGGTTTAATTTTGTCCTCTTCAAAACAATCAAGGGATACTAGGTCATCAACTCATGGGGTCACGCGAGGTTCTGGATCAGGGTCCTTTAATTCTGGAACAATAACATACACCGGGTCTGCTAAGATGTTTACTTTGATTGACATAGAGAAAGCAACAAATAAATTCGACTCTTCAAGAATATTAGGAGAAGGTGGTTTTGGACTTGTTTACAAAGGTATTCTAAATGATGGGAGGGATGTAGCGGTGAAGATTCTTAAAAGAGATGATCAGCGTGGAGGCCGAGAATTCTTGGCAGAAGTTGAGATGCTTAGCCGCCTACACCATAGGAATTTAGTTAAATTGATAGGTATATGCATAGAGAAACAGACTCGTTGCCTAATCTATGAGCTTGTCCCTAATGGAAGTGTGGAATCACACTTACATGGTGCTGACAAGGAAACTGGTCCACTAGACTGGAATGCCCGGATGAAGATTGCACTTGGTGCAGCTCGAGGATTGGCTTATCTGCATGAAGATTCAAATCCATGTGTCATACATAGGGACTTCAAGTCCAGCAACATCTTGTTGGAATGTGACTTTACACCCAAAGTTTCAGATTTTGGACTGGCTAGAACAGCACTGGACGAGGGAAACAAGCATATCTCCACACATGTCATGGGCACATTTGGCTACTTAGCTCCGGAATATGCAATGACCGGCCATCTTCTCGTCAAAAGTGATGTTTACAGTTACGGAGTTGTACTCCTTGAGCTCCTAACCGGTAGAAAGCCTGTGGACCTGTCACAACCGCCAGGTCAAGAAAACCTCGTCACTTGGGCTCGTCCAATTCTCACAAGTAAGGAGGGTTTGCAGATGATCATAGACCCAGTTATAAAGCCCCACATATCTGTCGACACTGCAGTAAAAGTTGCAGCAATAGCTTCCATGTGTGTGCAACCAGAAGTGTCTCAACGTCCTTTCATGGGTGAAGTTGTTCAGGCCTTGAAGCTGGTATGCAATGAGTTTGAGGAAACAAACTATGCAAGATCAAGGAGATTTCAAGAAGAGGGTCTTCTGAGTCATGTGGAAGGGAAGTTTTGTGGCTATCAATCTGGTGAAGAAAAGGCAGCATTATCACCATCAGAGCTTCTCAGCACTTCAGGCCAGGAATTTGAGTCTTTCAGGAGGCATTCTACTTCAGGGCCTCTGATTACAGGGAAGAAAATACACTTTTGGCAAAAATTGAGAAGAGGTAGCACCAGCGAACATGGATTTCAACTAAACTATGGCTAG 2475 0.4356 MVLQLILLLIKLHLVVSSQQLQEYAATNLLHSRTRSLLSNAVLPSVLSSEVPSSIADPPAESSSGIAGSIALPPSKSMTKTPAKKWMHHKHHYSRRENQYPTPGPTYPIQAPTYSHQGPSAFESLPPFSSKSKDIRAPSPAPSPALLSGHLDAAPSHSPRISPLGSSLKKIKSPPPAYTLVLPPPPPNKDCLSMTCSEPLTYTPPGSPCGCVWPLQVKLRIGVAIYKCFPLVSKLAEEIAASVFLNHSQVRIVGADAANQQLEKTNVLVNLVPKGVKFDDTTAFSMYKKFWHREILLDASLFGAYEVLYVHYPGLPPSPPSTPSGVSSIDDGPNPGHDNNGMMMKPLGVDVSKKEKEGSNGRMIFIIVLSSITAFVLFIGLAWLCMLKCGTYVHKKEQVPDGLILSSSKQSRDTRSSTHGVTRGSGSGSFNSGTITYTGSAKMFTLIDIEKATNKFDSSRILGEGGFGLVYKGILNDGRDVAVKILKRDDQRGGREFLAEVEMLSRLHHRNLVKLIGICIEKQTRCLIYELVPNGSVESHLHGADKETGPLDWNARMKIALGAARGLAYLHEDSNPCVIHRDFKSSNILLECDFTPKVSDFGLARTALDEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSQPPGQENLVTWARPILTSKEGLQMIIDPVIKPHISVDTAVKVAAIASMCVQPEVSQRPFMGEVVQALKLVCNEFEETNYARSRRFQEEGLLSHVEGKFCGYQSGEEKAALSPSELLSTSGQEFESFRRHSTSGPLITGKKIHFWQKLRRGSTSEHGFQLNYG* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1496 824 CDD STKc_IRAK 462 730 - -
Lja3g1496 824 PANTHER OS01G0750732 PROTEIN 8 821 - -
Lja3g1496 824 MobiDBLite consensus disorder prediction 320 345 - -
Lja3g1496 824 Gene3D Phosphorylase Kinase; domain 1 430 531 - -
Lja3g1496 824 Pfam Protein tyrosine and serine/threonine kinase 459 729 IPR001245 GO:0004672|GO:0006468
Lja3g1496 824 PANTHER OS01G0750732 PROTEIN 8 821 - -
Lja3g1496 824 Gene3D Transferase(Phosphotransferase) domain 1 532 751 - -
Lja3g1496 824 SUPERFAMILY Protein kinase-like (PK-like) 436 729 IPR011009 -
Lja3g1496 824 MobiDBLite consensus disorder prediction 99 127 - -
Lja3g1496 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 578 590 IPR008271 GO:0004672|GO:0006468
Lja3g1496 824 MobiDBLite consensus disorder prediction 52 170 - -
Lja3g1496 824 ProSiteProfiles Protein kinase domain profile. 456 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1496 824 MobiDBLite consensus disorder prediction 404 427 - -
Lja3g1496 824 ProSitePatterns Protein kinases ATP-binding region signature. 462 484 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1496 Lja-Chr3 16043870 16048904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1496 188 818 Receptor kinase-like Gene Family AT5G56890 59.451 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Lja3g1496 PK_Tyr_Ser-Thr 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1496 - - gmx:100814040 1264.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g5032 3 92504733 92510155 Lja3g1496 3 16043870 16048904 PCT