Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1485 ATGATGAGTCAAGAGCAACAGAAACGGGGTAAGCAAGAGAAAGGTTCTGATGGTGCTGAGAAGGTTATTGTTGCCGTTAAGGCTTCAAGGGAAATTCCAAGGACTGCTCTTGTTTGGTCCCTGACTCATGTTGTTCAACCTGGAGATTGCATTACTCTGCTTGTGGTTGTGCCTTCACAAAATTCAGGTAGAAGATTATGGGGATTTCCGAGATTTGCTGGTGACTGTGCCAGTGGTATTAAGAAGTACCCTCCAGGAACCATTTTAGAGCAGAAAAGTGATATCACTGATTCTTGCTCCCAGATGATCCTTCGGCTCCATGACGTATATGATCCAAACAAGATAAATGTCAGGATTAAAATTGTTTCCGGATCACCTTGTGGAGCAGTGGCGGCAGAAGCCAAGAAAGCAGAAGCCAATTGGGTGGTATTAGACAAGCATCTCAAACAAGAGGAAAAGCGATGCATGGAGGAGTTGCAGTGTAATATTGCGGTTATGAAGCATTCTCAACCAAAAGTGCTACGCTTGAATTTGATTGGACCACAAAAGAAGGATGTTGGAGAAGCAAGTCCATCTCCTTCTGAGCAAGATGATATGCCTGAAAAGGGAACCAGAAACAAGATTGATTCTTTAAATTCTATCAAAGGGCCAACTGTCACTCCATCTAGCAGCCCTGAGCTAGGGACACCGTTCACTGCTACTGAAGCTGGTACCTCATCAGCTTCAAGCTCTGATCCAGGAACCTCACCATTCTTTAACTCAGAGGTGAATGGTCAATCAAAGAAAGAGGAAACCATCAAGGAAAATGAAGAGCTTGGTGATACTAATTCAGATACAGAAAGTGAAAGTCTGTCCACATCTTCAGCAAGCTTGAGATTTCAGCCGTGGATCACAGAATTGCTTTTACATCAACAATCATCTCAATGCAATGAAGAAAGATCAGAGACATATCCTGGTATGCCTCAAGCACCTACAACCAGAGCTTTGGTAGAAAAGTTTTCTAGGCTTGATAGAGGAGCTGGAATTGAAATCTCAACCTATAGAAATGACTCTGATTTCAGTGGTAATTTAAGAGAAGCAATAGCATTATCAGGAAATGCTCCACCAGGTCCCCCTCCATTGTGTTCAATTTGTCAACACAAGGCACCTGTTTTTGGAAAACCTCCAAGGTGGTTCAGCTATGCTGAGTTAGAACTTGCCACTGGTGGATTTTCACAAGCCAACTTCTTGGCAGAAGGAGGGTTTGGATCTGTTCACAGAGGGGTTCTACCTGAAGGACAGGTCATTGCTGTTAAACAACACAAATTGGCTAGTTCTCAAGGTGATATTGAGTTTTGCTCTGAGGTAGAAGTCTTGAGCTGTGCTCAACACCGGAATGTTGTTATGCTGATTGGGTTCTGTATAGAGGATAAAAGAAGGCTTCTAGTTTACGAGTACATTTGCAATGGGTCATTGGATGTACATTTATATGGGAGACAAAGGGATCCACTAGAATGGTCTGCTCGGCAAAAAATTGCTGTTGGAGCTGCTCGTGGTTTAAGGTATCTTCATGAAGAGTGCAGAGTGGGTTGCATTATCCACCGTGACATGAGACCAAACAACATTCTCATAACTCATGATTTTGAACCTCTGGTTGGTGACTTTGGACTGGCTAGGTGGCAGCCTGATGGAGATACAGGTGTGGAAACTAGAGTGATTGGAACATTCGGGTATTTGGCTCCTGAATATGCTCAAAGTGGCCAAATCACTGAAAAAGCTGATGTATATTCCTTTGGGGTGGTATTAGTCGAACTTGTTACAGGGAGAAAAGCTGTGGATCTCACTCGGCCCAAGGGACAGCAGTGCCTTACTGAGTGGGCACGACCGCTCTTGGAAGAATATGCCATTGATGAACTGATTGATCCGAGGCTAGGTAGTCACTATGCAGAGCAAGAAGTATATTGCATGCTGCATGCTGCAGCATTATGCATACGGCGAGATCCTCATTCCAGACCACGCATGTCACAGGTTCTCCGAATACTAGAGGGAGACATGGTCATGGACACAAATTACATATCAACTCCAGGTTATGATGTGGGAAACAGGAGTGGTCGAATTTGGTCAGAGCCTCTACAGAGGCAGCACCCTTACAGTGGTCCCCTCTTAGAAGAATCATTCAGTGGGAAGCTATCTCTTGACAAATACAAACCTGCCTACTGGGATAGGGATAGGCACTAG 2217 0.4429 MMSQEQQKRGKQEKGSDGAEKVIVAVKASREIPRTALVWSLTHVVQPGDCITLLVVVPSQNSGRRLWGFPRFAGDCASGIKKYPPGTILEQKSDITDSCSQMILRLHDVYDPNKINVRIKIVSGSPCGAVAAEAKKAEANWVVLDKHLKQEEKRCMEELQCNIAVMKHSQPKVLRLNLIGPQKKDVGEASPSPSEQDDMPEKGTRNKIDSLNSIKGPTVTPSSSPELGTPFTATEAGTSSASSSDPGTSPFFNSEVNGQSKKEETIKENEELGDTNSDTESESLSTSSASLRFQPWITELLLHQQSSQCNEERSETYPGMPQAPTTRALVEKFSRLDRGAGIEISTYRNDSDFSGNLREAIALSGNAPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPEGQVIAVKQHKLASSQGDIEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDVHLYGRQRDPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLTEWARPLLEEYAIDELIDPRLGSHYAEQEVYCMLHAAALCIRRDPHSRPRMSQVLRILEGDMVMDTNYISTPGYDVGNRSGRIWSEPLQRQHPYSGPLLEESFSGKLSLDKYKPAYWDRDRH* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1485 738 ProSitePatterns Tyrosine protein kinases specific active-site signature. 525 537 IPR008266 GO:0004672|GO:0006468
Lja3g1485 738 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 17 709 - -
Lja3g1485 738 Coils Coil 262 282 - -
Lja3g1485 738 PANTHER OS01G0253100 PROTEIN 17 709 IPR045271 GO:0004714|GO:0006468
Lja3g1485 738 SUPERFAMILY Protein kinase-like (PK-like) 388 683 IPR011009 -
Lja3g1485 738 MobiDBLite consensus disorder prediction 260 274 - -
Lja3g1485 738 MobiDBLite consensus disorder prediction 180 287 - -
Lja3g1485 738 CDD STKc_IRAK 410 676 - -
Lja3g1485 738 ProSiteProfiles Protein kinase domain profile. 404 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1485 738 Pfam Protein tyrosine and serine/threonine kinase 408 673 IPR001245 GO:0004672|GO:0006468
Lja3g1485 738 Gene3D Phosphorylase Kinase; domain 1 376 479 - -
Lja3g1485 738 MobiDBLite consensus disorder prediction 206 259 - -
Lja3g1485 738 Gene3D Transferase(Phosphotransferase) domain 1 480 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1485 Lja-Chr3 15874913 15878968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1485 345 670 Trihelix Transcription Factor Family AT1G68690 50.606 6.46e-103 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Lja3g1485 PK_Tyr_Ser-Thr 2.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1485 - - gmx:100783226 1321.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1485 3 15874913 15878968 Lja3g1485 3 15874913 15878968 ECH
Lja3g5048 3 92640692 92646824 Lja3g1485 3 15874913 15878968 PCT