Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1483 ATGTTAATCATGCTAGCACTATCAGGTTCTGCTATAAGATGTGATTTCTCATTGATTTGTCTGAAGGATTTTGATATCACATCTCTCTGTTCTCAAAGGAGCTCAATAGACATCATCAATGTACTTTTTGTCTGTTTCTTGTACACTTCCTTGCTTATTAGTTTAATCAGAAGAGTTTCGAGTGGGAGCCACAGAAAAAGCTGGGTTTTCCCTGTTGTCTCAATCTGTTGTGCTCTCATTGCCATTGCTTTCTTCACTATTGGCTTGTGGAATATCATAGTCAAAACTGGCAACTCCAAATGGTTAGCTTGCATTATCAGAGGATTTGTTTGGATTTCTTTCACAGTTTCTCTGCTTGTTCAGAGATCAAAATGGATTGCAATTTTAACATCTATCTGGTGGGCATCTTCATGTGTATTGGTTTCAGCTCTCAACATTGAAATTCTGTTCAAAGATCATGCCATTGAAATTTTTGATATCATAGAGTGGCTTGTGCATTTCCTTCTTCTATTCTGTGCCTTCAAGAACCTTGCTTTTTTTGTCACTCAAAGTGACCCTGAATATTTATCTGAGCCACTTTTATCTCAGAAATTTGAAACTAAACAAACAGGACTAGCCCATGCTACCTTCCTCAGCAAGTTTATTTTCTCTTGGGTTAATCCTTTACTCAGTTTAGGTTACTCAAAACCTCTAGCTCTTGAAGACATCCCTTCCCTTGTTTCCGAAGACGAAGCAGACTCTGCCTACCAAAACTTTGTGCATTCATGGGAATCCCTTGTGAGGGAGAGGAGCAAGAACAATACCAAGAACTTGGTTCTTTGGTCTATTGTCAGAACTTACTTAAAAGAAAACATATTAATAGCATTTTATGCGTTGCTCAGAACCATTGCTGTAGTAGTTTCACCTCTAATACTCTTTGCATTTGTAAACTACTCTAATAAAACTGAGTCAGATCTCAAAGAAGGTCTTTCCATAGTGGGTTTTCTGATTGTCACCAAGGTGGTTGAGTCTTTGTCCCAGAGACATTGGTTTTTCAACTCTAGGAGGTCTGGGATGAAAATGAGATCAGCTCTGATGGTGGCAGTTTATAAGAAGCAGCTGAAGCTTTCAAGCACAGCAAGGAGAAGGCACTCAACTGGTGAAATTGTGAATTACATCGCGGTTGATGCCTATAGAATGGGAGAGTTTCCATGGTGGTTTCATATAACATGGGTTTGTGCATTGCAGCTTGTTGTGTCTGTTGGTGTACTTTTTGGTGTTGTAGGCCTTGGTGCTCTTCCTGGTTTAGTCCCTCTTTTGATATGTGGATTTCTCAATGTACCGTTTGCGAAGATCCTACAAAATTGTCAGTCAAAGTTCATGATTGCACAGGATGAGCGTCTTAGATCAACATCAGAAATTCTAAATAGTATGAAAATCATTAAATTACAATCATGGGAGGATAAGTTCAGGAACTTGATCGAGTCCTTACGCGCTGAGGAGTTCATATGGTTGTCTAAGGCACAGATCCTGAAAGCTTCTGGATCATTTCTTTATTGGATGTCTCCTACCATTGTTTCTAGTGTTGTTTTCCTTGGATGTGCTCTTTTCAAAAGTGCCCCTTTGAATGCTGAAACCATTTTCACAGTTCTTGCGACACTCAGGAACTTGGGAGAACCTGTTCGACTGATTCCGGAGGCTCTATCTATTATGATCCAAAATCAGGTCTCCTATGATCGTCTCAATGCGTTTTTGCTTGATGAAGAGCTAAACAATGATGATAGTGGAAGAAATATAAAGCAATGTTCAGCCAATGCTGTGGAAATTCAAGATGGCAACTTCATTTGGGATCATGAATCTGTGTCTCCAACTCTAAGAGATGTGAATTCAGAAATCAAATGGGGACAGAAAATTGCAATTTGTGGTCCAGTTGGAGCTGGAAAGTCATCACTTTTGTATGCAATACTTGGAGAGATTCCTAAGATTTCAGGAATTGTTAATCTAGGAGGCACCCTAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCAAGACAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATATGAGAATGCCATCAAAGTGTGTGCCTTGGATAAGGATATCAATGATTTTAGCCATGGTGATCTAACAGAAATAGGTCAGCGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTCGCGCGAGCAGTCTATAATGATGCTGATATCTATCTCCTAGATGACCCTTTCAGTGCAGTTGATGCACACACTTCTGCTATTCTGTTCAATGACTGTGTCATGACTGCTCTAAGAGAGAAAACAGTCATCCTAGTCACTCATCAAGTGGAGTTTCTCTCAGAAGTGGATACAATCTTGGTAATGGAAGGTGGAAAAGTTATTCAATCAGGTAGTTATGAGAATCTCCTGAAAGCTGGGACAGCCTTTGAAAAACTTGTGACCGCCCATAAAGACGCAATCACAGAGTTGAATCAAGACAATGGAAATAAAGGAGGTTCTGAAAATGAGGTTATGGCTCATCCAAAAGATTCCCATGGCATTTACCTGACTAAAAATCAAAGTGAGGGGGAGATTTCTACAAAGGGTCAACTCGGGCCACAGCTTACAGAAGAAGAAGGAAAAGAGATTGGTGATGTTGGCTGGATGCCATTCTGGGATTATATTACTTTTTCCAAGGGGACACTCATGCTGTGCTTCATCATGTTAGCACAAGCTGCTTTTATTGTTTTCCAGAGTGCATCAAGTTTTTGGCTTGCTATAGCCATTGATATTCCAAAAGTAACCAGTGCCATCTTGATTGGAGTTTACACATTAATTTCATTTTCTAGTGTTGGGTTTATATATTTAAGGTCTATCTGGACCGCATATCTTGGATTAAAAGCTTCTAAAAACTTCTTCTCAAGTTTCACTACAGCTATCTTCAATGCTCCTATGCTGTTCTTTGACTCAACCCCTATAGGAAGGATTCTAACCCGAGCTTCATCAGATTTGAGCATTTTGGACTTTGATATTCCTTATGCCATCACTTTTGTAGCATCTGTAATAATTGAAATTCTGGTGACAATTGGTATAATGGCTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTCGCATCAAAGTTTGTTCAGGGATATTATCAAGCCTCTGCAAGGGAACTAATAAGGATCAATGGAACAACAAAAGCTCCAGTGATGAATTTTGCAACTGAGACTTCCCTTGGAGTGGTTACTGTAAGAGCATTCAACATGGTAGACAGATTTTTCAGAAACTACTTAAAACTTGTCGACACAGATGCAACACTGTTCCTCCATTCTAATGTGGCCATGGAATGGTTAGCTTTAAGGATTGAAGTGCTTCAAAATTTGACAGTCATCACTGCTGCTTTGTTACTTATTCTTGCTCCTCAAGGATACGTGTCGCCAGGCCTTGTAGGGCTCTCTCTTTCTTATGCTTTCTCATTGACAGGATCCCAAATATTTTGGACTAGATGGTTTTGCAACTTATCAAACTATCTAATCTCTGTTGAAAGAATCAAGCAATTCATTCACATACCAGCAGAGCCTCCTGCCATTGTGGAGGATAACCGGCCTCCATCTTCATGGCCTTCCAAGGGCAGGATTGATCTTCAAGCCTTAGAGATTAGATATCGTCCAAATGCTCCATTAGTCCTCAAGGGTATCACTTGTACGTTTAAAGAAGGGAGCAGAGTTGGAGTTGTAGGAAGGACTGGAAGTGGAAAAAGCACACTTATCAGTGCTTTGTTTCGCTTAGTTGAGCCTTCAAGAGGTACTATTCTCATAGATGAGATTAACATATGCTCAATGGGGTTGAAGGATTTGAGAACCAATCTTAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGAACCAACTTGGACCCTCTAGGTCTGTACACTGATGACCAAATATGGAAGGCTTTGGAGAAATGTCAGCTTAAGGGAACAATCAGCAATCTACCAAGTCTCTTGGACTCTTCAGTGAGTGATGAAGGGGGAAATTGGAGCTTGGGACAGCGCCAATTGTTTTGTCTTGGAAGAGTACTTCTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCTACCGCCTCCATTGACGCTGCCACAGATGCCATTCTTCAGCAAGTAATTAGACAAGAGTTTGCAGAATGCACAGTTATAACTGTGGCTCATAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTCCTGTCCTATGGGAAAATGTTGGAATATGATGAGCCTTCTAAGCTAATGGATACCAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGTCCAGCTGCAGGAGGAATTCCTCTCCAAATATTGGCAGGCAGCAATAA 4413 0.4045 MLIMLALSGSAIRCDFSLICLKDFDITSLCSQRSSIDIINVLFVCFLYTSLLISLIRRVSSGSHRKSWVFPVVSICCALIAIAFFTIGLWNIIVKTGNSKWLACIIRGFVWISFTVSLLVQRSKWIAILTSIWWASSCVLVSALNIEILFKDHAIEIFDIIEWLVHFLLLFCAFKNLAFFVTQSDPEYLSEPLLSQKFETKQTGLAHATFLSKFIFSWVNPLLSLGYSKPLALEDIPSLVSEDEADSAYQNFVHSWESLVRERSKNNTKNLVLWSIVRTYLKENILIAFYALLRTIAVVVSPLILFAFVNYSNKTESDLKEGLSIVGFLIVTKVVESLSQRHWFFNSRRSGMKMRSALMVAVYKKQLKLSSTARRRHSTGEIVNYIAVDAYRMGEFPWWFHITWVCALQLVVSVGVLFGVVGLGALPGLVPLLICGFLNVPFAKILQNCQSKFMIAQDERLRSTSEILNSMKIIKLQSWEDKFRNLIESLRAEEFIWLSKAQILKASGSFLYWMSPTIVSSVVFLGCALFKSAPLNAETIFTVLATLRNLGEPVRLIPEALSIMIQNQVSYDRLNAFLLDEELNNDDSGRNIKQCSANAVEIQDGNFIWDHESVSPTLRDVNSEIKWGQKIAICGPVGAGKSSLLYAILGEIPKISGIVNLGGTLAYVSQTSWIQSGTVQDNILFGKPMDKTRYENAIKVCALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTSAILFNDCVMTALREKTVILVTHQVEFLSEVDTILVMEGGKVIQSGSYENLLKAGTAFEKLVTAHKDAITELNQDNGNKGGSENEVMAHPKDSHGIYLTKNQSEGEISTKGQLGPQLTEEEGKEIGDVGWMPFWDYITFSKGTLMLCFIMLAQAAFIVFQSASSFWLAIAIDIPKVTSAILIGVYTLISFSSVGFIYLRSIWTAYLGLKASKNFFSSFTTAIFNAPMLFFDSTPIGRILTRASSDLSILDFDIPYAITFVASVIIEILVTIGIMASVTWQVLIVAVPAMVASKFVQGYYQASARELIRINGTTKAPVMNFATETSLGVVTVRAFNMVDRFFRNYLKLVDTDATLFLHSNVAMEWLALRIEVLQNLTVITAALLLILAPQGYVSPGLVGLSLSYAFSLTGSQIFWTRWFCNLSNYLISVERIKQFIHIPAEPPAIVEDNRPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGTILIDEINICSMGLKDLRTNLSIIPQEPTLFKGSIRTNLDPLGLYTDDQIWKALEKCQLKGTISNLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDAATDAILQQVIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKMLEYDEPSKLMDTNSSFSKLVAEYWSSCRRNSSPNIGRQQ* 1471
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1483 1470 Pfam ABC transporter 1236 1384 IPR003439 GO:0005524
Lja3g1483 1470 Gene3D ABC transporter type 1, transmembrane domain 871 1200 IPR036640 GO:0005524|GO:0016021
Lja3g1483 1470 Gene3D ABC transporter type 1, transmembrane domain 260 582 IPR036640 GO:0005524|GO:0016021
Lja3g1483 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 596 822 IPR027417 -
Lja3g1483 1470 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 907 1169 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g1483 1470 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 65 1464 - -
Lja3g1483 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1209 1452 IPR027417 -
Lja3g1483 1470 CDD ABCC_MRP_domain2 1217 1437 - -
Lja3g1483 1470 Gene3D - 1202 1453 IPR027417 -
Lja3g1483 1470 Pfam ABC transporter transmembrane region 903 1168 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g1483 1470 Pfam ABC transporter transmembrane region 286 545 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g1483 1470 Pfam ABC transporter 618 752 IPR003439 GO:0005524
Lja3g1483 1470 CDD ABC_6TM_ABCC_D1 286 574 IPR044746 GO:0140359
Lja3g1483 1470 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1221 1453 IPR003439 GO:0005524
Lja3g1483 1470 SUPERFAMILY ABC transporter transmembrane region 273 580 IPR036640 GO:0005524|GO:0016021
Lja3g1483 1470 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 65 1464 - -
Lja3g1483 1470 CDD ABCC_MRP_domain1 600 800 - -
Lja3g1483 1470 SUPERFAMILY ABC transporter transmembrane region 892 1201 IPR036640 GO:0005524|GO:0016021
Lja3g1483 1470 CDD ABC_6TM_ABCC_D2 901 1194 IPR044726 GO:0140359
Lja3g1483 1470 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 600 823 IPR003439 GO:0005524
Lja3g1483 1470 Gene3D - 594 828 IPR027417 -
Lja3g1483 1470 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 285 566 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g1483 1470 SMART AAA_5 1245 1430 IPR003593 -
Lja3g1483 1470 SMART AAA_5 627 800 IPR003593 -
Lja3g1483 1470 ProSitePatterns ABC transporters family signature. 725 739 IPR017871 GO:0005524
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja3g1483 Lja-Chr3 15828816 15835066 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1483 585 865 Calmodulin-binding Proteins AT2G36910 26.578 1.74e-21 100
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1483 - - gmx:100784827 2317.35
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1483 3 15828816 15835066 Lja3g1483 3 15828816 15835066 ECH