Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja3g1483 | ATGTTAATCATGCTAGCACTATCAGGTTCTGCTATAAGATGTGATTTCTCATTGATTTGTCTGAAGGATTTTGATATCACATCTCTCTGTTCTCAAAGGAGCTCAATAGACATCATCAATGTACTTTTTGTCTGTTTCTTGTACACTTCCTTGCTTATTAGTTTAATCAGAAGAGTTTCGAGTGGGAGCCACAGAAAAAGCTGGGTTTTCCCTGTTGTCTCAATCTGTTGTGCTCTCATTGCCATTGCTTTCTTCACTATTGGCTTGTGGAATATCATAGTCAAAACTGGCAACTCCAAATGGTTAGCTTGCATTATCAGAGGATTTGTTTGGATTTCTTTCACAGTTTCTCTGCTTGTTCAGAGATCAAAATGGATTGCAATTTTAACATCTATCTGGTGGGCATCTTCATGTGTATTGGTTTCAGCTCTCAACATTGAAATTCTGTTCAAAGATCATGCCATTGAAATTTTTGATATCATAGAGTGGCTTGTGCATTTCCTTCTTCTATTCTGTGCCTTCAAGAACCTTGCTTTTTTTGTCACTCAAAGTGACCCTGAATATTTATCTGAGCCACTTTTATCTCAGAAATTTGAAACTAAACAAACAGGACTAGCCCATGCTACCTTCCTCAGCAAGTTTATTTTCTCTTGGGTTAATCCTTTACTCAGTTTAGGTTACTCAAAACCTCTAGCTCTTGAAGACATCCCTTCCCTTGTTTCCGAAGACGAAGCAGACTCTGCCTACCAAAACTTTGTGCATTCATGGGAATCCCTTGTGAGGGAGAGGAGCAAGAACAATACCAAGAACTTGGTTCTTTGGTCTATTGTCAGAACTTACTTAAAAGAAAACATATTAATAGCATTTTATGCGTTGCTCAGAACCATTGCTGTAGTAGTTTCACCTCTAATACTCTTTGCATTTGTAAACTACTCTAATAAAACTGAGTCAGATCTCAAAGAAGGTCTTTCCATAGTGGGTTTTCTGATTGTCACCAAGGTGGTTGAGTCTTTGTCCCAGAGACATTGGTTTTTCAACTCTAGGAGGTCTGGGATGAAAATGAGATCAGCTCTGATGGTGGCAGTTTATAAGAAGCAGCTGAAGCTTTCAAGCACAGCAAGGAGAAGGCACTCAACTGGTGAAATTGTGAATTACATCGCGGTTGATGCCTATAGAATGGGAGAGTTTCCATGGTGGTTTCATATAACATGGGTTTGTGCATTGCAGCTTGTTGTGTCTGTTGGTGTACTTTTTGGTGTTGTAGGCCTTGGTGCTCTTCCTGGTTTAGTCCCTCTTTTGATATGTGGATTTCTCAATGTACCGTTTGCGAAGATCCTACAAAATTGTCAGTCAAAGTTCATGATTGCACAGGATGAGCGTCTTAGATCAACATCAGAAATTCTAAATAGTATGAAAATCATTAAATTACAATCATGGGAGGATAAGTTCAGGAACTTGATCGAGTCCTTACGCGCTGAGGAGTTCATATGGTTGTCTAAGGCACAGATCCTGAAAGCTTCTGGATCATTTCTTTATTGGATGTCTCCTACCATTGTTTCTAGTGTTGTTTTCCTTGGATGTGCTCTTTTCAAAAGTGCCCCTTTGAATGCTGAAACCATTTTCACAGTTCTTGCGACACTCAGGAACTTGGGAGAACCTGTTCGACTGATTCCGGAGGCTCTATCTATTATGATCCAAAATCAGGTCTCCTATGATCGTCTCAATGCGTTTTTGCTTGATGAAGAGCTAAACAATGATGATAGTGGAAGAAATATAAAGCAATGTTCAGCCAATGCTGTGGAAATTCAAGATGGCAACTTCATTTGGGATCATGAATCTGTGTCTCCAACTCTAAGAGATGTGAATTCAGAAATCAAATGGGGACAGAAAATTGCAATTTGTGGTCCAGTTGGAGCTGGAAAGTCATCACTTTTGTATGCAATACTTGGAGAGATTCCTAAGATTTCAGGAATTGTTAATCTAGGAGGCACCCTAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCAAGACAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATATGAGAATGCCATCAAAGTGTGTGCCTTGGATAAGGATATCAATGATTTTAGCCATGGTGATCTAACAGAAATAGGTCAGCGAGGGATTAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTCGCGCGAGCAGTCTATAATGATGCTGATATCTATCTCCTAGATGACCCTTTCAGTGCAGTTGATGCACACACTTCTGCTATTCTGTTCAATGACTGTGTCATGACTGCTCTAAGAGAGAAAACAGTCATCCTAGTCACTCATCAAGTGGAGTTTCTCTCAGAAGTGGATACAATCTTGGTAATGGAAGGTGGAAAAGTTATTCAATCAGGTAGTTATGAGAATCTCCTGAAAGCTGGGACAGCCTTTGAAAAACTTGTGACCGCCCATAAAGACGCAATCACAGAGTTGAATCAAGACAATGGAAATAAAGGAGGTTCTGAAAATGAGGTTATGGCTCATCCAAAAGATTCCCATGGCATTTACCTGACTAAAAATCAAAGTGAGGGGGAGATTTCTACAAAGGGTCAACTCGGGCCACAGCTTACAGAAGAAGAAGGAAAAGAGATTGGTGATGTTGGCTGGATGCCATTCTGGGATTATATTACTTTTTCCAAGGGGACACTCATGCTGTGCTTCATCATGTTAGCACAAGCTGCTTTTATTGTTTTCCAGAGTGCATCAAGTTTTTGGCTTGCTATAGCCATTGATATTCCAAAAGTAACCAGTGCCATCTTGATTGGAGTTTACACATTAATTTCATTTTCTAGTGTTGGGTTTATATATTTAAGGTCTATCTGGACCGCATATCTTGGATTAAAAGCTTCTAAAAACTTCTTCTCAAGTTTCACTACAGCTATCTTCAATGCTCCTATGCTGTTCTTTGACTCAACCCCTATAGGAAGGATTCTAACCCGAGCTTCATCAGATTTGAGCATTTTGGACTTTGATATTCCTTATGCCATCACTTTTGTAGCATCTGTAATAATTGAAATTCTGGTGACAATTGGTATAATGGCTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTCGCATCAAAGTTTGTTCAGGGATATTATCAAGCCTCTGCAAGGGAACTAATAAGGATCAATGGAACAACAAAAGCTCCAGTGATGAATTTTGCAACTGAGACTTCCCTTGGAGTGGTTACTGTAAGAGCATTCAACATGGTAGACAGATTTTTCAGAAACTACTTAAAACTTGTCGACACAGATGCAACACTGTTCCTCCATTCTAATGTGGCCATGGAATGGTTAGCTTTAAGGATTGAAGTGCTTCAAAATTTGACAGTCATCACTGCTGCTTTGTTACTTATTCTTGCTCCTCAAGGATACGTGTCGCCAGGCCTTGTAGGGCTCTCTCTTTCTTATGCTTTCTCATTGACAGGATCCCAAATATTTTGGACTAGATGGTTTTGCAACTTATCAAACTATCTAATCTCTGTTGAAAGAATCAAGCAATTCATTCACATACCAGCAGAGCCTCCTGCCATTGTGGAGGATAACCGGCCTCCATCTTCATGGCCTTCCAAGGGCAGGATTGATCTTCAAGCCTTAGAGATTAGATATCGTCCAAATGCTCCATTAGTCCTCAAGGGTATCACTTGTACGTTTAAAGAAGGGAGCAGAGTTGGAGTTGTAGGAAGGACTGGAAGTGGAAAAAGCACACTTATCAGTGCTTTGTTTCGCTTAGTTGAGCCTTCAAGAGGTACTATTCTCATAGATGAGATTAACATATGCTCAATGGGGTTGAAGGATTTGAGAACCAATCTTAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGAACCAACTTGGACCCTCTAGGTCTGTACACTGATGACCAAATATGGAAGGCTTTGGAGAAATGTCAGCTTAAGGGAACAATCAGCAATCTACCAAGTCTCTTGGACTCTTCAGTGAGTGATGAAGGGGGAAATTGGAGCTTGGGACAGCGCCAATTGTTTTGTCTTGGAAGAGTACTTCTTAAGAGGAACAGAATTCTTGTTCTGGATGAAGCTACCGCCTCCATTGACGCTGCCACAGATGCCATTCTTCAGCAAGTAATTAGACAAGAGTTTGCAGAATGCACAGTTATAACTGTGGCTCATAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTCCTGTCCTATGGGAAAATGTTGGAATATGATGAGCCTTCTAAGCTAATGGATACCAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGTCCAGCTGCAGGAGGAATTCCTCTCCAAATATTGGCAGGCAGCAATAA | 4413 | 0.4045 | MLIMLALSGSAIRCDFSLICLKDFDITSLCSQRSSIDIINVLFVCFLYTSLLISLIRRVSSGSHRKSWVFPVVSICCALIAIAFFTIGLWNIIVKTGNSKWLACIIRGFVWISFTVSLLVQRSKWIAILTSIWWASSCVLVSALNIEILFKDHAIEIFDIIEWLVHFLLLFCAFKNLAFFVTQSDPEYLSEPLLSQKFETKQTGLAHATFLSKFIFSWVNPLLSLGYSKPLALEDIPSLVSEDEADSAYQNFVHSWESLVRERSKNNTKNLVLWSIVRTYLKENILIAFYALLRTIAVVVSPLILFAFVNYSNKTESDLKEGLSIVGFLIVTKVVESLSQRHWFFNSRRSGMKMRSALMVAVYKKQLKLSSTARRRHSTGEIVNYIAVDAYRMGEFPWWFHITWVCALQLVVSVGVLFGVVGLGALPGLVPLLICGFLNVPFAKILQNCQSKFMIAQDERLRSTSEILNSMKIIKLQSWEDKFRNLIESLRAEEFIWLSKAQILKASGSFLYWMSPTIVSSVVFLGCALFKSAPLNAETIFTVLATLRNLGEPVRLIPEALSIMIQNQVSYDRLNAFLLDEELNNDDSGRNIKQCSANAVEIQDGNFIWDHESVSPTLRDVNSEIKWGQKIAICGPVGAGKSSLLYAILGEIPKISGIVNLGGTLAYVSQTSWIQSGTVQDNILFGKPMDKTRYENAIKVCALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTSAILFNDCVMTALREKTVILVTHQVEFLSEVDTILVMEGGKVIQSGSYENLLKAGTAFEKLVTAHKDAITELNQDNGNKGGSENEVMAHPKDSHGIYLTKNQSEGEISTKGQLGPQLTEEEGKEIGDVGWMPFWDYITFSKGTLMLCFIMLAQAAFIVFQSASSFWLAIAIDIPKVTSAILIGVYTLISFSSVGFIYLRSIWTAYLGLKASKNFFSSFTTAIFNAPMLFFDSTPIGRILTRASSDLSILDFDIPYAITFVASVIIEILVTIGIMASVTWQVLIVAVPAMVASKFVQGYYQASARELIRINGTTKAPVMNFATETSLGVVTVRAFNMVDRFFRNYLKLVDTDATLFLHSNVAMEWLALRIEVLQNLTVITAALLLILAPQGYVSPGLVGLSLSYAFSLTGSQIFWTRWFCNLSNYLISVERIKQFIHIPAEPPAIVEDNRPPSSWPSKGRIDLQALEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGTILIDEINICSMGLKDLRTNLSIIPQEPTLFKGSIRTNLDPLGLYTDDQIWKALEKCQLKGTISNLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDAATDAILQQVIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKMLEYDEPSKLMDTNSSFSKLVAEYWSSCRRNSSPNIGRQQ* | 1471 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja3g1483 | 1470 | Pfam | ABC transporter | 1236 | 1384 | IPR003439 | GO:0005524 | |
Lja3g1483 | 1470 | Gene3D | ABC transporter type 1, transmembrane domain | 871 | 1200 | IPR036640 | GO:0005524|GO:0016021 | |
Lja3g1483 | 1470 | Gene3D | ABC transporter type 1, transmembrane domain | 260 | 582 | IPR036640 | GO:0005524|GO:0016021 | |
Lja3g1483 | 1470 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 596 | 822 | IPR027417 | - | |
Lja3g1483 | 1470 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 907 | 1169 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Lja3g1483 | 1470 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 65 | 1464 | - | - | |
Lja3g1483 | 1470 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1209 | 1452 | IPR027417 | - | |
Lja3g1483 | 1470 | CDD | ABCC_MRP_domain2 | 1217 | 1437 | - | - | |
Lja3g1483 | 1470 | Gene3D | - | 1202 | 1453 | IPR027417 | - | |
Lja3g1483 | 1470 | Pfam | ABC transporter transmembrane region | 903 | 1168 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Lja3g1483 | 1470 | Pfam | ABC transporter transmembrane region | 286 | 545 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Lja3g1483 | 1470 | Pfam | ABC transporter | 618 | 752 | IPR003439 | GO:0005524 | |
Lja3g1483 | 1470 | CDD | ABC_6TM_ABCC_D1 | 286 | 574 | IPR044746 | GO:0140359 | |
Lja3g1483 | 1470 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1221 | 1453 | IPR003439 | GO:0005524 | |
Lja3g1483 | 1470 | SUPERFAMILY | ABC transporter transmembrane region | 273 | 580 | IPR036640 | GO:0005524|GO:0016021 | |
Lja3g1483 | 1470 | PANTHER | NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED | 65 | 1464 | - | - | |
Lja3g1483 | 1470 | CDD | ABCC_MRP_domain1 | 600 | 800 | - | - | |
Lja3g1483 | 1470 | SUPERFAMILY | ABC transporter transmembrane region | 892 | 1201 | IPR036640 | GO:0005524|GO:0016021 | |
Lja3g1483 | 1470 | CDD | ABC_6TM_ABCC_D2 | 901 | 1194 | IPR044726 | GO:0140359 | |
Lja3g1483 | 1470 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 600 | 823 | IPR003439 | GO:0005524 | |
Lja3g1483 | 1470 | Gene3D | - | 594 | 828 | IPR027417 | - | |
Lja3g1483 | 1470 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 285 | 566 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Lja3g1483 | 1470 | SMART | AAA_5 | 1245 | 1430 | IPR003593 | - | |
Lja3g1483 | 1470 | SMART | AAA_5 | 627 | 800 | IPR003593 | - | |
Lja3g1483 | 1470 | ProSitePatterns | ABC transporters family signature. | 725 | 739 | IPR017871 | GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja3g1483 | Lja-Chr3 | 15828816 | 15835066 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja3g1483 | 585 | 865 | Calmodulin-binding Proteins | AT2G36910 | 26.578 | 1.74e-21 | 100 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja3g1483 | - | - | gmx:100784827 | 2317.35 |