Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1459 ATGGAAGGTCTGAATTGGGATCCAACTCCTTCACATCTTGCAGCAAACACACCAATCTTATGGAGTTCTCAGCAGCAGCAACAAGAGTTTGAAGGAGGCTACCCCATATCCAGCTTAACTTCAAGTGTTCTAAATCAAATACAAGATATGCAGAAACCTCCTCAAACATTTCATGCAAATTCCAATCCTGAAAGATTGATTTATCAGTCATCAGTTGCTTCTTCCACCAGTTCAGATCAGATAATGGATGTGATTCATCACATTCACAACACAAACATATCACATCATGCAGCAACAACCATGTCAGTGAAATCAGGACCTTTAACATCCCAATCCCACCCATTTTTTAGCAACTACAACATCACAGATTTCAACATGGTCCACCAACAACGACTTATCAATGGCTCACAACAAAACTCTCTTGATTGCTTACTTTCAGCTACTAACAGCAACACAGATACTTCTGTGGAAGATGATGGGATCTCAATGATTTTACCTGACTGTGGAAACTTATGGAACTTCAGTCATGGCAGTGCAGCAGCTTCCTCTGGTGAATCTGAGACTAATGCTTCTAATGGTACTAAAAACAAACACATGGAGTTCCAAGTCAATGAACCTGTCCAAACAGTGTCTCAAAGCTCCTCTGATCAATTGAAGCCAAAGAGGAGAAATAATCAATCCTCTGATGACCAATACTTCACTATGCTTGAGAATTCTCCAATTGAAGGTGGTTTCAGATTAATCTCAGAAAATCCACCAAAGTGCAAGAAACCAAGATGGGAAAAGGGTTCCTGCAGTTCATCTAACATCAATTTCCAGCAACCAAACTCTTCTTCTTCCATTGAAGAGCCTGATCCAGAGGCAATTGCACAAATGAAGGAAATGATATATAGGGCGGCAGCTTTTAGGCCTGTGAGCTTGTTGGGGTTGGAGGAGGTGGCTGAAAAGCCTAAGAGGAAGAATGTGAAGATATCAAGTGATCCACAAACTGTGGCTGCAAGGCAAAGAAGGGAGAGAATAAGTGATAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGGAGCAAGATGGACACTGCATCAATGCTTGATGAGGCTGCAAATTACCTCAAGTTTCTCAGGTCACAGGTCAAGGCACTGGAAAGTTTAGGGAACAAAGTTAGTACTGCAATGGATTATTGTTCTCCTTCTAGCATTGCCTTCTCTTTCAATCCTTCTTTTCCCATGCAAATGAAGGATGATTACCAGTTACCATCATCACATCCACCATTCCCAGGGTTGAAGTGA 1287 0.4172 MEGLNWDPTPSHLAANTPILWSSQQQQQEFEGGYPISSLTSSVLNQIQDMQKPPQTFHANSNPERLIYQSSVASSTSSDQIMDVIHHIHNTNISHHAATTMSVKSGPLTSQSHPFFSNYNITDFNMVHQQRLINGSQQNSLDCLLSATNSNTDTSVEDDGISMILPDCGNLWNFSHGSAAASSGESETNASNGTKNKHMEFQVNEPVQTVSQSSSDQLKPKRRNNQSSDDQYFTMLENSPIEGGFRLISENPPKCKKPRWEKGSCSSSNINFQQPNSSSSIEEPDPEAIAQMKEMIYRAAAFRPVSLLGLEEVAEKPKRKNVKISSDPQTVAARQRRERISDRIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGNKVSTAMDYCSPSSIAFSFNPSFPMQMKDDYQLPSSHPPFPGLK* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1459 428 SMART finulus 330 379 IPR011598 GO:0046983
Lja3g1459 428 MobiDBLite consensus disorder prediction 244 283 - -
Lja3g1459 428 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 324 373 IPR011598 GO:0046983
Lja3g1459 428 Coils Coil 363 383 - -
Lja3g1459 428 PANTHER TRANSCRIPTION FACTOR BHLH87 1 413 - -
Lja3g1459 428 MobiDBLite consensus disorder prediction 262 283 - -
Lja3g1459 428 Pfam Helix-loop-helix DNA-binding domain 334 373 IPR011598 GO:0046983
Lja3g1459 428 MobiDBLite consensus disorder prediction 200 232 - -
Lja3g1459 428 Gene3D - 329 393 IPR036638 GO:0046983
Lja3g1459 428 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 413 IPR045843 GO:0003700|GO:0006355
Lja3g1459 428 CDD bHLH_AtIND_like 325 383 - -
Lja3g1459 428 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 330 389 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1459 Lja-Chr3 15421339 15422625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1459 140 410 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 53.929 8.05e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g1459 HLH 5.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1459 - - vra:106773034 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1459 3 15421339 15422625 Lja3g1459 3 15421339 15422625 ECH
Lja3g5063 3 92821184 92822488 Lja3g1459 3 15421339 15422625 PCT