Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1451 ATGCAAGTCACGTCCTCACACAGCTCCATGAAAGCAGAGCTAAAGCCACCAACCTCCATCTCCTTCCAAAACCCCACCACCACCCCTCTCTTCAACACACCCCACAGTACTAGTACACCCCTCTCAGGAGCACTCAAAGGCTGTCTCGGAAGCCTCGACGGCGCCTGCATCGAGAAGCTCCTCCTCCACTGCGCCAGCGCCTTGGAGAGCAATGACATCACCTTGGCACAACAAGTCATGTGGGTCCTCAACAACGTTGCTTCGCCCCACGGCGACACCAACCAGCGCCTCACCGCGTGGTTCCTCAGAGCACTAATCTCCAGAGCTTCAAGAATTTGCCCCTCCGCAATGAGTTTCAAGGGAAGTAACAACATTCCAAGGAGGTTGATGACGGTGACCGAGCTAGCAGGGTATGTGGATCTTATTCCATGGCATAGGTTCGGGTTTTGTGCATCAAACAATGAAATTCTCAAAGCTGTTACAGGGTTTCAAAGGGTACATGTTCTTGATTTCAGCATAACCCCTTGTATGCAATGGCCTACTTTTATAGATGCATTAGCTAAAAGACCAGAAGGATCTCCTTCACTTAGAATCACAGTTCCATCTTTTAGGCCACAAGTTCCTCCTTTAGTTAACATTTCAATACATGAGGTTGGGTTGCGTTTAGGTAATTTCGCCAAATTCAGAGATGTCCCTTTTGAATTTCATGTTATAGGAGATACAGAACAGTTGAGCAATGAATCAAACACCTTTCATTTTGAGTCCTTGTTGAGTCTATTGAATCCTAGTGTGCTAAACCTTAGGGAAGATGAAGCATTGGTGATCAATTGCCAAAATTGGCTGCGTTACTTGTCTGATGATGATAGAAATTCAAATTCCCTTAGGGATGCTTTTCTGAGTTTAATTAAAGGTCTTAGCCCTCAAATTGTGCTCTTGGTTGATGAGGATTGTGATCTCAGCGCATCGAGTCTCGCGTCGAGAATCACCGCATGTTTCAACCATCTGTGGATACCCTTTGATGCACTAGATACTTTTTTGCCTAAGGATAGTTCTCAAAGGACAGAGTTTGAGTCTGACATAGGACAGAAAATTGAGAACATCATAGGCTTTGAAGGGCATCAGAGAATAGAGAGATTGGAGTCCGGGGTGATGATGTCACAGAGAATGAAGAATGCAGGGTACTTCAGCGTTCCATTTTGTGATGAAACTGTTAAGGAAGTTAAGGGTTTGCTTGATGAACATGCTGGTGGATGGGGGATGAAGAGGGATGAAGGTATGTTGGTTCTCACGTGGAAGGGAAACAACTGTGTGTTTGTGACAGCTTGGGTCCCTAGTGGAATGAGGGATCATGTTGGTATGGATGCAACTCTATCTTAA 1377 0.4553 MQVTSSHSSMKAELKPPTSISFQNPTTTPLFNTPHSTSTPLSGALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPHGDTNQRLTAWFLRALISRASRICPSAMSFKGSNNIPRRLMTVTELAGYVDLIPWHRFGFCASNNEILKAVTGFQRVHVLDFSITPCMQWPTFIDALAKRPEGSPSLRITVPSFRPQVPPLVNISIHEVGLRLGNFAKFRDVPFEFHVIGDTEQLSNESNTFHFESLLSLLNPSVLNLREDEALVINCQNWLRYLSDDDRNSNSLRDAFLSLIKGLSPQIVLLVDEDCDLSASSLASRITACFNHLWIPFDALDTFLPKDSSQRTEFESDIGQKIENIIGFEGHQRIERLESGVMMSQRMKNAGYFSVPFCDETVKEVKGLLDEHAGGWGMKRDEGMLVLTWKGNNCVFVTAWVPSGMRDHVGMDATLS* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1451 458 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 11 444 IPR005202 -
Lja3g1451 458 ProSiteProfiles GRAS family profile. 48 443 IPR005202 -
Lja3g1451 458 PANTHER OS05G0500600 PROTEIN 11 444 - -
Lja3g1451 458 MobiDBLite consensus disorder prediction 1 36 - -
Lja3g1451 458 Pfam GRAS domain family 58 442 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1451 Lja-Chr3 15328888 15330459 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1451 37 444 GRAS Transcription Factor Family AT3G49950 45.455 3.21e-115 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja3g1451 GRAS 2.5e-89 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1451 - - gmx:100802093 770