Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1448 ATGAATGGTGTTTTTCATGATGTTTCCGAGCTTCGTTCTGGAAAGGAGCAGTGGAGGATTATGGTGAAGGTCATTCGTATTTGGTATAGTAAAGGATTTGCCTCATCGAAGCTTCCCCTCTCCCTTGAGTGTGTTTTGATTGATGACAAGGGTAACAAGATCCATGCGAATATCAAAAAGACTTTGATGTACAAGTTCGAAAAGTTATTAGTTGAGGGTAATGTCTACAGTCTGTCTGGGTTTGTTCTGGTTGATAATACTGGGGACTACAAGACCACTAGACACAACTATAAGATATGCTTCATGTTCAAAACTGAAGTGCGCCCTATGAACCAGTTTACCATGGATGTGTTTCCGTACACATTTGTATCATTTCCCCAGATTTTGTCACCCGATTATGATGGAAATTATTTAGTAGATGTGATCGGTATCTTAACTGGAGTTGGGGTTGAGAGGGAAATTGTTACCAATGGGAAGAAATCTAAGATGAATGTAGTTGAGATTGATTCCGAAGGGATGAGGATTGAATGTGCCCTGTTCGGAGTCTATGTTGATGAGCTTACAAATTTCCTTGGTGGTGGTGAACTGAATTACCCTGTAGTTATCATTCAGTTTGCGAAGGTGAAATCATTTCAGGGGAATAATAGTCTCCAAAATGTGCATGGTGCTACAAAGATATTGTTTGATCCTGTGTTTCCCGCATCTGAAGAGTTGAAGAGAAGGAAGACGATTGCCGCTTTGAAGGATTTGAAAAAGGATTGTGTTTGTATTTTGTATGCCACCATTTGCCCTGTAGAAGAAGATGTTGAGTGGTGGTATACCGCATGTAGGTGCAACCGGAAGGTTTATGCTGATGAAAAAATGTACTTCTGCGAGGGTTGTAATCGTCATGTGCTTGCTGTATATCCTAGGTATCGGTTGCAGTTAAGGGTGGAAGACGATTCTGGTTGTTGCAATTTGGTTCTATTTGACAAGGAGGCTTCCTATTTGGTTGGGAAATCATGCACTGAAGTTGTTGAATCCTTTGAGAAGGGTGAAGGCCCTAATGAGGTTCCTGATGAATTTGCAAGATTCATTGGCACTGATGCCCTGTTCAAGATAGAGGTTAAGAATTATCACGGCCAAAGGTTTGAGCGTTCCCGTTTTGAATCATCCTACCGTGTTAAGCGTGTGTGTACCGATGAAGCCATTATACAAAAGTTCCAATCTTTGCAGTTAGAACAAACTGTACGTGTTCAATTGCCTTATATTTGCTATACTTTTTTACCTAATGCTGGACCTGATATCAATGCTTACGGGATAAAGGTTGGCGCTTCTTCCAGTCGCATGCCTGTTACACCGCAGTCTATTATGAAGCATGAAGATGTAGCCAAGGATCTGATGGATGAATTTGTGGTTGCATCTGGTGACAAGTCTCCTGAAACTCCTTTATGTGTCACATCTCCCACTATTGATCTGGCTGGAGATACTCAGGACATTATTAATTCCAAGAGAAGTTCTTCAGCAGATGAGGAAGAGGTCCCGAATGTGATTGCAAGTAAGAAGAAGGGTCAGCCTAAGATGAAGAAGGACAAGAAGTGA 1581 0.4143 MNGVFHDVSELRSGKEQWRIMVKVIRIWYSKGFASSKLPLSLECVLIDDKGNKIHANIKKTLMYKFEKLLVEGNVYSLSGFVLVDNTGDYKTTRHNYKICFMFKTEVRPMNQFTMDVFPYTFVSFPQILSPDYDGNYLVDVIGILTGVGVEREIVTNGKKSKMNVVEIDSEGMRIECALFGVYVDELTNFLGGGELNYPVVIIQFAKVKSFQGNNSLQNVHGATKILFDPVFPASEELKRRKTIAALKDLKKDCVCILYATICPVEEDVEWWYTACRCNRKVYADEKMYFCEGCNRHVLAVYPRYRLQLRVEDDSGCCNLVLFDKEASYLVGKSCTEVVESFEKGEGPNEVPDEFARFIGTDALFKIEVKNYHGQRFERSRFESSYRVKRVCTDEAIIQKFQSLQLEQTVRVQLPYICYTFLPNAGPDINAYGIKVGASSSRMPVTPQSIMKHEDVAKDLMDEFVVASGDKSPETPLCVTSPTIDLAGDTQDIINSKRSSSADEEEVPNVIASKKKGQPKMKKDKK* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1448 526 SUPERFAMILY Nucleic acid-binding proteins 120 241 IPR012340 -
Lja3g1448 526 CDD RPA1_DBD_C 244 370 IPR013955 -
Lja3g1448 526 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 339 - -
Lja3g1448 526 CDD RPA1_DBD_A_like 19 107 - -
Lja3g1448 526 SUPERFAMILY Nucleic acid-binding proteins 5 112 IPR012340 -
Lja3g1448 526 Gene3D - 5 112 IPR012340 -
Lja3g1448 526 SUPERFAMILY Nucleic acid-binding proteins 240 380 IPR012340 -
Lja3g1448 526 CDD RPA1_DBD_B_like 140 241 - -
Lja3g1448 526 Pfam Replication factor-A C terminal domain 258 382 IPR013955 -
Lja3g1448 526 Gene3D - 233 397 IPR012340 -
Lja3g1448 526 Gene3D - 129 227 IPR012340 -
Lja3g1448 526 PANTHER REPLICATION FACTOR A 1, RFA1 20 339 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja3g1448 526 MobiDBLite consensus disorder prediction 489 526 - -
Lja3g1448 526 Pfam Domain of unknown function DUF223 43 138 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1448 Lja-Chr3 15275665 15278605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1448 1 379 Core DNA Replication Machinery Family AT5G08020 23.624 4.46e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1448 - - lja:Lj6g3v0923340.1 632.869