Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1431 ATGGATCAAGTAACAGCACAAGGGCGTCCTCTTCCTCCTCCTTTTCTCACCAGAGACCTCCACCTACACCCTCACCACCAGTTTCAATCCCTTCACAACCACCAAAACAATGAAGATGAACAGCAAAGCGGCAATGGCAACTTGACCCGCGGCCAGAAGCGAGATCGCGGCGACGACAACGCCGCCACCACTCCCACGGGTGCTGATGTGAAAGATGAGGGCGGCAGTGGTAGCGGCAGCGGAGAAATTTCAAGAAGACCAAGAGGAAGGCCTGCTGGTTCCAAGAATAAGCCCAAGCCGCCCATTATCATTACTAGAGATAGCGCCAACGCTCTCCGATCTCATGTCATGGAGGTCGCCAACGGCTGCGACATCATGGAGAGCGTGACGGTCTTCGCCCGGAGGAGGCAGCGTGGAGTGTGCATCCTTTCTGGGAGCGGCACAGTCACCAACGTCACGCTCCGGCAGCCGGCTTCTCCGGGTGCGGTCGTCACACTCCATGGAAGGTTCGAGATTCTCTCCCTGTCAGGGTCTTTCCTGCCGCCGCCAGCTCCACCGGCTGCGTCTGGCCTGGCCATATACCTGGCCGGGGGGCAGGGGCAGGTGGTCGGCGGCAGCGTGGTGGGACCTTTGCTGGCCTCAGGTCCTGTGGTCATCATGGCTGCTTCCTTTGGAAATGCTGCTTATGAAAGACTGCCCTTGGAGGATGAGGAAACCCCAGCTACCGTTACGGGTAGCGGAGGATTAGGGTCACCAGGGATTATGGGAACCCCGCAGCAACAACCGCAATCGCAACCACAACAGCAACAACTCATGCCGGATCCTAATGCTTCACTCTTCCATGGAGTGCCTCAAAATCTTCTCAATTCATGCCAATTACCATCTGAGGGTTATTGGAATGGCAGTGCTCGCCCACCTTTTTAA 924 0.5693 MDQVTAQGRPLPPPFLTRDLHLHPHHQFQSLHNHQNNEDEQQSGNGNLTRGQKRDRGDDNAATTPTGADVKDEGGSGSGSGEISRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEVANGCDIMESVTVFARRRQRGVCILSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLEDEETPATVTGSGGLGSPGIMGTPQQQPQSQPQQQQLMPDPNASLFHGVPQNLLNSCQLPSEGYWNGSARPPF* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1431 307 MobiDBLite consensus disorder prediction 235 283 - -
Lja3g1431 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 4 307 IPR014476 GO:0003680
Lja3g1431 307 Pfam Plants and Prokaryotes Conserved (PCC) domain 113 225 IPR005175 -
Lja3g1431 307 CDD DUF296 113 180 IPR005175 -
Lja3g1431 307 Gene3D - 112 242 - -
Lja3g1431 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 4 307 - -
Lja3g1431 307 MobiDBLite consensus disorder prediction 253 275 - -
Lja3g1431 307 ProSiteProfiles PPC domain profile profile. 109 247 IPR005175 -
Lja3g1431 307 SUPERFAMILY AF0104/ALDC/Ptd012-like 109 241 - -
Lja3g1431 307 MobiDBLite consensus disorder prediction 29 50 - -
Lja3g1431 307 MobiDBLite consensus disorder prediction 1 103 - -
Lja3g1431 307 PIRSF ESCAROLA 17 307 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1431 Lja-Chr3 15147042 15148743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1431 1 307 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 63.830 1.91e-90 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1431 - - gmx:100816243 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1431 3 15147042 15148743 Lja3g1431 3 15147042 15148743 ECH