Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1425 ATGAACTCTAGTTGTAGCAATAGTGGTGGTGGTGGCTGTGGTGTTGGTCCTTGTGGCGCGTGCAAGTTCTTGAGGAGGAAGTGTGTGCCGGGTTGTGTATTTGCGCCATACTTCGATTCGGAACAAGGTGCAGCTCACTTTGCGGCTGTTCACAAGGTTTTTGGAGCCAGCAACGTTTCCAAGCTGCTACTTAACCTGCCGGAGCAGAAGCGTCTTGATGCGGTGATCACCATTTGTTATGAAGCGCAGGCAAGGATGAGAGACCCTGTGTATGGTTGTGTTGCTCATATCTTCGCTCTTCAGCAACAGGTTGTGAGTTTACAAGGAGAACTCTCCTACTTACAAGGTCAACTTGCCACAATAGAGTTACACCAACGACCACCACCTTCTCCGCCACAAGCAACCATAGCTCCTCCTCTTCCTCCTCCGCTGTTTTCAATAGCCAACCTCCCATTAGCTCCTGCCTCTAACATGCAAGTCGCATATGACTTATCTTCACTTTTTGAACCCATGGGCCAAAGTTCTTCATGGCACATGCATCATAGGCCCGTAGACTCACATCAATGTTTTGGTAGTGCCACTAGTAGTGGTGGTGGTGGTGATCTTCAAGCATTGGCCCATGAGCTGTTGCATAGACATGGATCTGCCCCAGTTGCATGCTCAAATGCCTCGTCATCTTACTCGCTTTCCAAATGA 696 0.4914 MNSSCSNSGGGGCGVGPCGACKFLRRKCVPGCVFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLNLPEQKRLDAVITICYEAQARMRDPVYGCVAHIFALQQQVVSLQGELSYLQGQLATIELHQRPPPSPPQATIAPPLPPPLFSIANLPLAPASNMQVAYDLSSLFEPMGQSSSWHMHHRPVDSHQCFGSATSSGGGGDLQALAHELLHRHGSAPVACSNASSSYSLSK* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1425 231 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
Lja3g1425 231 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 4 215 - -
Lja3g1425 231 ProSiteProfiles LOB domain profile. 16 118 IPR004883 -
Lja3g1425 231 PANTHER LOB DOMAIN CONTAINING PROTEIN 4 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1425 Lja-Chr3 15076475 15081683 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1425 20 231 AS2 family AT2G45420 58.482 3.90e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja3g1425 LOB 2.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1425 K21994 - gmx:100779541 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3190 1 39424130 39426337 Lja3g1425 3 15076475 15081683 PCT