Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1421 ATGGAAGCAAGAGAAGGTATCAGTTCTGGGGTTACAGTGATAGGAGCAGAAGCTCCATCAGCTTATCATGTGGCACCGAGGAGTGAAGCTCCGAACCAAGTTCATGTCCCTGCACCAGCATCAGCAGGTACTGCTGCAGCTATTGTTGGCTCACCGGTGAGTGTAGGGTTGGATGTTACAATTAAGAAGAAACGGGGTAGACCAAGGAAATATGGACCAGATGGGCCTGTCTCCATGGCATTGTCACCATTGCCAATCTCATCTTCAGTTCCGCCTTCTAATGACTATTCATCTGGGAAACGAGGGAAGCCACGCGGGATGGAATACAAGCAGTCGAAAAAAATTGGGTTGGATCATCATCTAGGTGACTTGAATGCATGCTCTGATGGTACAAGCTTTATGCCGCATATCATCACTGTCAATGCTGGTGAGGACATCACAATGAAGGTCATATCCTTTTCTCAACAAGGGCCCCGAGCTATATGCATCTTATCTGCTAATGGTGTGATTTCAAATGTCACACTTCGTCAGCCTGATTCTTCTGGGGGTACTTTGACCTATGAGGGTCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGAGAACCAAGGAACTAGAAGCAGGTCAGGTGGAATGAGCGTCTCGCTGGCAAGCCCTGATGGCCGCGTTGTAGGTGGTGGAGTTGCTGGTCTTCTTGTAGCTGCCAGTCCCGTTCAGGTGGTGGTGGGAAGTTTTCTACCAAACAGCCAGCAAGATCAGAAACCAAAGAAGCCCAAGTCTGATTATACATCTGTTACTGTTACACCAGTGATGGCAGTTTCTTCTGCTCCACCCGCAACTAGTGCTGAAAAAGAGGATGTACATGTTATGGGTGGTGGACATGTACTGCCAAATTCCGGAACCCTTAACTCAAGCCTCGCTCCTCCTCCCAACAACGCCTTCCGAAGAGACAACTGGGTCAACATGCACTCCATGCCAGACTCAAGAAAGACAGCTACTGATATTAACATATCTTTGCCTGATAGTTAA 1038 0.4778 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPAPASAGTAAAIVGSPVSVGLDVTIKKKRGRPRKYGPDGPVSMALSPLPISSSVPPSNDYSSGKRGKPRGMEYKQSKKIGLDHHLGDLNACSDGTSFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPNSQQDQKPKKPKSDYTSVTVTPVMAVSSAPPATSAEKEDVHVMGGGHVLPNSGTLNSSLAPPPNNAFRRDNWVNMHSMPDSRKTATDINISLPDS* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1421 345 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 344 - -
Lja3g1421 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 135 248 IPR005175 -
Lja3g1421 345 ProSiteProfiles PPC domain profile profile. 130 271 IPR005175 -
Lja3g1421 345 MobiDBLite consensus disorder prediction 64 106 - -
Lja3g1421 345 Gene3D - 135 271 - -
Lja3g1421 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 344 IPR039605 GO:0003680
Lja3g1421 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 252 - -
Lja3g1421 345 MobiDBLite consensus disorder prediction 82 96 - -
Lja3g1421 345 CDD DUF296 135 225 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1421 Lja-Chr3 15039658 15044545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1421 6 315 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 55.233 2.52e-101 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1421 - - gmx:100793726 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1421 3 15039658 15044545 Lja3g1421 3 15039658 15044545 ECH
Lja1g3192 1 39452949 39457733 Lja3g1421 3 15039658 15044545 PCT