Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1387 ATGGCAAGAGTGTTGAACTTTGAAACTCAACAAGTCGAGCATGATGTGTCCTCTTTGCAGCAGACACCAGCGACCTCATCACGAGGTGACAATGGAGGGAACAAAGACCGTAATCAACAACCTGTTGTTGCGACACTCCAGAATGTGGAAGAAGCTCCACATTCCGTTGAAGAAACCCAACCTCCTCCTACTTCTGGTGTCGGCACCCAACGACCCGGTGGAAATTTCAATAGTCGCCATACTCAACACCAGATACAAGTGATGGAAAACTTCTTCAAATATAACCCTTACCCAAATGAGAGGCAAAGGAGAGAGCTCGGCAATTTTATCGGGCTGAATTCTATGCAAATCAAGTTTTGGTTCCAAAACAAGCGCACCCAGATGAATTATATGTTGGAACATCACCAAAATACCCTTTTGATTGCTGAGAATGAAAAGCTCCGTGCTGAGAACCTACAGTACAAGGAAGCATTGAGGAACGTGAGGAATGTTAAGTACCTTCACTATAGAGGCTGCCCATCTTCTGTTGGTGAAATGTCCTTTGAAGAGAAGCATTTGAGGCTTGAGAATGCTCAATTGAAAGAAAAGCTTAAAAAGATAAGAGAAATGATAGCAAAAATTGCAATACAACCATCAAGGACTTCATTCTCTAACCATCCACTGCCACCTCGCATTCCAATATCTTCAAGCTCGTTTGATATTGTCAACTATGTTCTGGAACCAAGCATGGAAATGCAAGTGCATGGTGGCAGAAGCGACCCTCAAATATCAATTATCACAACTCCTTTTACTGAACCTGAGAAATCCTTAATTATGGAGCTTGCAGTTGGAGCTATGGAGGAATTTACTAAGATTGCTAATTGTGGATCACCTTTATGGATCCCCGGAATGCATAGTGATATTCTAAACCAACAAGAGTATGTTAGGGTTTTCCATGCAGGACTAGGGCCAACACCTATGGGGTTCAGATCTGAAGGCTCAAGGGAATCCATGATGGTTACCATGAATCCTAATAATCTCATTGAAATCCTTATGGATGTTATATCAGCAGAGTTCCAGACGCTCTCACATCTTGTTCCTGCTCGTAATAGTTATTTCGTAAGGTATTGTAAGTATCACCCTGATAGGGCATGGGTTGTGGTTGATATTTCCTTGGATGATATGCGACCTGGTGCTGCCACAAGATGCAGAAGACGACCCTCTGGTTGTATGATTCAAGAATTTTCAAATCGTTTCTCAAAGGTTACATGGATTGAACATGTAGAAGTTGAAGAGAAAGAAGTGCATGATATAGTCAAACATCTATGTAATTCTGGCTTTGCCTTTGGAGCTAGGCAGTGGATAAGAACTTTAGAAAGATATTGTGAGGGCACTAACATACCACTAGAAGACATTAATGGGATAGATCCTGAAGAAAGAAAAACCTTGATGAAGTTGGCAGAGAAAATTATGCAGAGCTATTGCAACTATGTTGGTGCTTCCCCACCACCTCATGTTTGGACAGTCCAGACAACACCAGCGGGCGCTGATGACGTGAGGGTCATGACCAAAAACAAAACTGATGCATCGGGAGCACTTATTGGTGTTGTTATTAGTGTTGCAACTTCTTTCTCTCTTCCAGTTCCTTCCAAAAGACTCTTTGAGTTTCTTCAAAATGAAGACTCAAGGAACCAGTGGGATATTCTCACCAAAGGTTTTCTAGTTCAAGAACTAGCACACATAGCAAGTGCTCGTGATCCTAGAAATTTTATCTCTTTACTTCATACCAAGAGTGAGAATTCAATCCAAAGCAGCAAGACCATAGTTCAAGAGACCTACACTGACTCTATAGGCTCGTATGTGGTGTATTCTCCAGTTGAACTTGATGCCATGAATTTAGTCTTGAGTGGCTCAGATCTAGATTATCGTAACTTGATGCCCTCAGGCTTTGCCATTATTCCTGATGGGTCCAGGCTGAGCGGCGGGCCCACAACTGATGTTGGATCTGGAGGGTGTCTTGGTACACTTGCATATCAAATATTGGTTCCAGCAACTCCAACACCACTAGATCCTAGCTTAGTGTCCTCTTTGTGCACTTTAATGAAGTGCACAATTGACAAAATCCAAACAGCAATGATGAGTGTCTGA 2127 0.4231 MARVLNFETQQVEHDVSSLQQTPATSSRGDNGGNKDRNQQPVVATLQNVEEAPHSVEETQPPPTSGVGTQRPGGNFNSRHTQHQIQVMENFFKYNPYPNERQRRELGNFIGLNSMQIKFWFQNKRTQMNYMLEHHQNTLLIAENEKLRAENLQYKEALRNVRNVKYLHYRGCPSSVGEMSFEEKHLRLENAQLKEKLKKIREMIAKIAIQPSRTSFSNHPLPPRIPISSSSFDIVNYVLEPSMEMQVHGGRSDPQISIITTPFTEPEKSLIMELAVGAMEEFTKIANCGSPLWIPGMHSDILNQQEYVRVFHAGLGPTPMGFRSEGSRESMMVTMNPNNLIEILMDVISAEFQTLSHLVPARNSYFVRYCKYHPDRAWVVVDISLDDMRPGAATRCRRRPSGCMIQEFSNRFSKVTWIEHVEVEEKEVHDIVKHLCNSGFAFGARQWIRTLERYCEGTNIPLEDINGIDPEERKTLMKLAEKIMQSYCNYVGASPPPHVWTVQTTPAGADDVRVMTKNKTDASGALIGVVISVATSFSLPVPSKRLFEFLQNEDSRNQWDILTKGFLVQELAHIASARDPRNFISLLHTKSENSIQSSKTIVQETYTDSIGSYVVYSPVELDAMNLVLSGSDLDYRNLMPSGFAIIPDGSRLSGGPTTDVGSGGCLGTLAYQILVPATPTPLDPSLVSSLCTLMKCTIDKIQTAMMSV* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1387 708 CDD homeodomain 78 128 IPR001356 GO:0003677
Lja3g1387 708 Pfam Homeodomain 79 127 IPR001356 GO:0003677
Lja3g1387 708 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 71 347 - -
Lja3g1387 708 SUPERFAMILY Homeodomain-like 59 128 IPR009057 -
Lja3g1387 708 SMART HOX_1 69 135 IPR001356 GO:0003677
Lja3g1387 708 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 71 347 IPR042160 -
Lja3g1387 708 ProSiteProfiles START domain profile. 264 460 IPR002913 GO:0008289
Lja3g1387 708 SMART START_1 273 457 IPR002913 GO:0008289
Lja3g1387 708 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 347 706 IPR042160 -
Lja3g1387 708 Coils Coil 183 210 - -
Lja3g1387 708 SUPERFAMILY Bet v1-like 266 457 - -
Lja3g1387 708 Gene3D - 69 142 - -
Lja3g1387 708 Pfam START domain 347 456 IPR002913 GO:0008289
Lja3g1387 708 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
Lja3g1387 708 MobiDBLite consensus disorder prediction 10 71 - -
Lja3g1387 708 SUPERFAMILY Bet v1-like 477 676 - -
Lja3g1387 708 Coils Coil 132 164 - -
Lja3g1387 708 MobiDBLite consensus disorder prediction 1 71 - -
Lja3g1387 708 Gene3D - 331 461 IPR023393 -
Lja3g1387 708 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 347 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1387 Lja-Chr3 14658645 14662419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1387 19 705 Homeobox Transcription Factor Family AT4G04890 44.669 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja3g1387 START 1.3e-27 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1387 K09338 - gmx:100815499 600.897