Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1380 ATGGCCACTTGTACCACCGCTTTATTGATCCTCCTCCTCATCCTTGCCACGGCTACCACCACCACCTTCAGCCTCCTAGAAATGGAGGTGCTCCAAATGGCTCAAACCCAGGTTTCACAGGCCAAGAATTGGGTTAATGGGAACAACTCACAATATGGATTGGGAACCCTTTCAGATGAAACAAGGAGTAGTGTTAATATTGTGGGTGGTGTGGCTCTAAGAGATTGTTCCAAGCTCTATGAGGAGAGCGAGTCTCGTCTCTCTCGCATGGTGTCATCTGACAAGAGTAGTTACACCAAAGAAGACGCGCTTACATGGGTAAGTGCTGTGATGACAAACCACAGGACTTGTTTGGATGGACTTCAGGAAAAAGGGCATGTTGAAGCTCATCAGTTATTGAGTAGAAAAAACTTGACCACGTTGCTTGGGCAAGCTCTTATTTTGTATTCTAAGACCAAAGTAAAAGGCAAAGGACTGCATCACAAAACAGTATCCGAATCAAATGATGGTCTTGCTTTAGAATCATGGAGTCCAGCTGCCCATAAGGCAGATTTCACGGTGGCACAGGACGGTTCAGGCAGCCACAGAACAATTAGAGAAGCGGTGGATGCATTGGCTGCAATGGGGCACAACCGTGGTGGAAGAAGAGCAGTTATACATGTGAAAGCAGGAGTCTACCATGAGAAGGTGGTGATTGGAAGCAAAATGCACAATGTGATGTTTGTAGGAGATGGAATAGACAGAACTATCATCACTGGAAACAGAAATGTTGTTCAAGGTTCTACCACTATGAACTCTGCCACATTTGATGTATCAGGGGATGGATTTTGGGCAAGAGACATAACGTTTGAGAACACAGCAGGCCCAGAAAAGCACCAAGCAGTTGCACTCAAATCAAGCTCCGACTTCTCAGTTTTCTACAGGTGCAGCTTCAAAGCCTACCAGGACACTCTCTACGTGCACTCCAACCGCCAATTCTACCGCGACTGCCACATATACGGCACCATAGACTTCATCTTTGGGGACGCCGCAGCAGTCCTGCAAAACTGCGACATCTTCGTGAGGAAACCGATGAGTCAGCAATCCAACTTCATCACCGCGCAAGGAAGAGACGATCCTAACAAACCAACTGGGATTTCGATACAGGGTTGCAGGGTCAGGCCCACCTCCGAAGGTGTTTCTTCCAAGACCTTCCTGGGAAGGCCTTGGAAGAAATACTCGAGGACAGTGTTTATGAAGAGTGATTTGGATGGGTTGATTCACCCCAGAGGGTGGGGTGAGTGGAGAGGAAATTTTGCACTCTCTACTCTGTACTATGGAGAGTATATGAACATTGGAAGTGGTGCTTCTACACAGAATAGGGTGAATTGGCCTGGTTTTCATGTGCTGAGGAGTGCTGGTGAGGCAGCACCATTTACTGTGAGTCGGTTTTTGCAAGGGGATCGTTGGATTCCAGCTTCAGGGGTGCCATTCTCGTCTGAAATTTAA 1488 0.4738 MATCTTALLILLLILATATTTTFSLLEMEVLQMAQTQVSQAKNWVNGNNSQYGLGTLSDETRSSVNIVGGVALRDCSKLYEESESRLSRMVSSDKSSYTKEDALTWVSAVMTNHRTCLDGLQEKGHVEAHQLLSRKNLTTLLGQALILYSKTKVKGKGLHHKTVSESNDGLALESWSPAAHKADFTVAQDGSGSHRTIREAVDALAAMGHNRGGRRAVIHVKAGVYHEKVVIGSKMHNVMFVGDGIDRTIITGNRNVVQGSTTMNSATFDVSGDGFWARDITFENTAGPEKHQAVALKSSSDFSVFYRCSFKAYQDTLYVHSNRQFYRDCHIYGTIDFIFGDAAAVLQNCDIFVRKPMSQQSNFITAQGRDDPNKPTGISIQGCRVRPTSEGVSSKTFLGRPWKKYSRTVFMKSDLDGLIHPRGWGEWRGNFALSTLYYGEYMNIGSGASTQNRVNWPGFHVLRSAGEAAPFTVSRFLQGDRWIPASGVPFSSEI* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1380 495 Gene3D Invertase/pectin methylesterase inhibitor family protein 2 152 IPR035513 -
Lja3g1380 495 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 22 150 IPR035513 -
Lja3g1380 495 SUPERFAMILY Pectin lyase-like 179 493 IPR011050 -
Lja3g1380 495 Pfam Pectinesterase 184 481 IPR000070 GO:0030599|GO:0042545
Lja3g1380 495 ProSitePatterns Pectinesterase signature 2. 332 341 IPR033131 -
Lja3g1380 495 Gene3D - 178 495 IPR012334 -
Lja3g1380 495 SMART PMEI_2 5 148 IPR006501 GO:0004857
Lja3g1380 495 CDD PMEI-like_4 56 151 - -
Lja3g1380 495 PANTHER PECTINESTERASE 7 494 - -
Lja3g1380 495 Pfam Plant invertase/pectin methylesterase inhibitor 22 134 IPR006501 GO:0004857
Lja3g1380 495 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 7 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1380 Lja-Chr3 14615465 14620078 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1380 6 495 Carbohydrate Esterase AT3G60730 54.493 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1380 K01051 - gmx:100792852 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1380 3 14615465 14620078 Lja3g1380 3 14615465 14620078 ECH
Lja3g3504 3 69656064 69658572 Lja3g1380 3 14615465 14620078 PCT