Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1377 ATGCACATGTTAGAGAAAGCCGAAAATAAAGGGGATGGATCTAAGTCCCTGCCTAAGATACTAGCCAAATGGAAAGAGTATAATGCTCAGCTTGATTCCTCCAATGATGGGGATAAGCCGGTTCGGAAAGTTCCTGCCAAGGGGTCGAAGAAGGGGTGCATGAAAGGCAAAGGAGGGCCTGAAAACTCGCGATGTAACTACAGAGGTGTTAGGCAAAGGACGTGGGGGAAGTGGGTTGCTGAGATTCGAGAGCCGAACAGAGGGAAAAGGCTCTGGCTAGGTACTTTTGCCACTGCCATTGGAGCTGCTCTTGCATATGATGAAGCGGCCAGGGCAATGTATGGTTCTTCTGCCCGCCTCAACTTTCCTAATGTTGCTGTTTCCAATTTCTCTGAGGAATCTTTGAAAGATTCTTCAGTTGCAAATGATGACTCTGGTTCCTCAATGGCGGCAGTTTTGGCAAATACCGAGTCCAAGGTATCATCAAATAACTCTGGGGTAGGCACAGAAGAGGATGTTGATATGGAGCCCATTTCCTTATCCCTGAGTGTAAAGCACATGAATGGAGAAGGTGAATCCGGCATAACTTCATCCCCTCCTTTATGCTTGTGA 612 0.4739 MHMLEKAENKGDGSKSLPKILAKWKEYNAQLDSSNDGDKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGKRLWLGTFATAIGAALAYDEAARAMYGSSARLNFPNVAVSNFSEESLKDSSVANDDSGSSMAAVLANTESKVSSNNSGVGTEEDVDMEPISLSLSVKHMNGEGESGITSSPPLCL* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1377 203 CDD AP2 65 125 IPR001471 GO:0003700|GO:0006355
Lja3g1377 203 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Lja3g1377 203 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Lja3g1377 203 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 170 - -
Lja3g1377 203 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Lja3g1377 203 PRINTS Ethylene responsive element binding protein signature 105 125 IPR001471 GO:0003700|GO:0006355
Lja3g1377 203 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Lja3g1377 203 MobiDBLite consensus disorder prediction 31 61 - -
Lja3g1377 203 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
Lja3g1377 203 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 170 - -
Lja3g1377 203 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1377 Lja-Chr3 14401781 14403454 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1377 8 129 AP2-EREBP Transcription Factor Family AT2G40350 61.111 3.30e-51 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja3g1377 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1377 - K09286 gmx:100527471 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1377 3 14401781 14403454 Lja3g1377 3 14401781 14403454 PCT